RnoINT0111288 @ rn6
Intron Retention
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49874496-49877856:+
Coord C1 exon
chr13:49874496-49874616
Coord A exon
chr13:49874617-49877744
Coord C2 exon
chr13:49877745-49877856
Length
3128 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CTTATCCCGTCCCCCACCAGTAA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GTTCCTCCACCGTGGACTTGCTCATTTACCAGACCCTCTGCTACACCCACGACGAGCTGAGGGAGGTGGATGTGGGCGACTTTGTGCTCAAGCCCTGTGGGCTGGAGGAATTCCTGCAAAA
Seq A exon
GTGAGTGAATGGAACCAGGGCCTTACTTGCCTTCTGGTTGGGAGAGCAAGGAAGGCCCTGAGAGAGCTCTACTTGGCTCAGCGTTTGCCGCTCTTCCCCAGCCCTGCAGTCAGGACTCCCACTCTCTGGGCACATTCTCAGCCACGTCGCACTTTCTGCAGGAGCTCCATCCTCCAACTGGGTTGGCTGGATCCTGAGCCAAATCTGCCGTGGAAAGAGCTTGGAGCTGGGATTAAGCAAAGATGAGGTCGTCTCAGTGTGTAGGCTTCTGAATGTGGAGAGATGTGCATAGTATGTGGGGGCGGCTCAGGGGCAGCGGCAGGCGGCTTCTCCTACTCTGGAGGGCATGCAGCCACCAGTCAGACATGCCCTTATAGAACCCAAGGAAGGCACCACAATGGCTCTGTTTGGCTTTCTCTGCCTTTGGTTCCACTGGCCTGTGCAGCTGTTTAGCCTCCTCTTAGGCCAGCTTCCAGCTCCCTCAGCCAGTGCCCTCTACAAAAGGCAGCCTCTCTGGAAAGTGTGATGTGGGACCAGCTAAGAGAAGCCCTCTCCACTACCCTGAACTGTGGAAAACTGGGGTGGGGTAGGCAGGGCTCCCACTCCTGGGGTTAGAATGATGTGGCGCAAACATCAGGAGTTCTGCTTCTCTCCACCCAAGCTGCCCACCATGGTGTGCCCCTTGGAGGAAACAGACCTTGTGAGCAGGGATAGGCAAGGCCTCTATCTCCCTCCTTAGTGGAGCCTGCGAACTGCCACTGTGAGCATTTTCCCTCGAGCAAGCCTTAATAGATTACTTGTCTGTGGTTAGAGCACAGGATTGATAGTCAGTACTAAATAAAGGTTCACTTCTTGACAGATGTCTTCAGCATTAGGGATAGTGACCACTCTCTGGCCTCTGCATCCTCATCTAGAAACTGAGGGAAAAGAAAACAGGCCCCGTCTTGGTATAATTCCAGGGCATCCACAAAAATACATTCCATGATGTGTTCACTGTATTCTTGCCCCCCGCTAGAGGGGCAGGGAGGGGTCCTGGTGCAGGGTCTCCTGGAAATGCTAGTGCTGGGCCCAGGGCTATCGTGGGTAAATCAGACTCTGGAGAACACAGTTTATACTCAGTTCTGGCTTTCCATTGACCAACTGTGAGGCCTGCTCTTTGGTGTTGGGGGTGTAGTGGTGGTAGAGATGAGGCCTAGCATGGATGAAGCCCTGGGTTTCATCTGTGTGTGTGCACACACACAGAGACTGAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCAGACAGACAGACAGACAGACAGACAGACAGACAGTGACCGATGGACAGAGGGGATGGGGTCAGAGTAAGGAGGTCCTCAGGAGCAGTCAGTGGATACTGGCAACAAGGGACCAACCCCAGAGGAAGACACATGGGACTCCCAAGTCACAGATGACACATTTTCCCTGCAGAGTCCCAATCCAGGAGCCTTGGAGTCTCAGAAGTAGTAGGACATGTCAATGTTCCTAATGATGTGACACCAGGCAGTGGTCTTTGGGTCACACGCTCCCCCTTCCCCCCACCCCAACTTGTACAGCACAGCTGAAGCCCTTCCACAAACAAGTTGAATCCCCTGGGGCTCTGACTCCCTGGTTCTACCCGTCCACCCTGCATAGCGCCATGTCCTGGGTGGAAAGGGCCCTCTGGAGTTTCCAGAAAATTGCTAGTTCCCAAGGAAGCTTCAGGATTGTTTCACTGAGCTGGAGGGGCCGATACTGAAGGGGAGTGTTGCTCCAGGATGCAGGCAGCTCAGTGATAAGAGCCTTGAGACAGTCCTAAGGGAGGCTGGGTTTCCTGCTACCTCCCCCTCTCTACCATTGCTCTCACTCTTCCTTCCTCACAGACCCTCCCGCAGGCCCGCCCTGCCTCACGGTCTAGCCTTCCCACACCATAGTTCACTTTTACTTTAGCCTTAGCCTATCAGAGCTCATATTGCAGGTGCCTGGTCCCCTCAGGATGTGGGGAGCCTCTAACTCTAGGCTGGTTGTGTTTGGCCTGAGGTCCTGAGGTATTTTTTTCGGCCTGAGGTCCTGTATTTCCAGAAGCTTCTGCATCCCTCTTCCCTTCTGCTCCCCTCCATTTTCTTCCATTCTAGTCTAGATTCCCACCTCTGCCGAGGAAGGAAGTCCTTTTCCGGCTTCTGCTACTCAGATGCTAGGGCCTGGCCCCACTTGTGCACCGGCCCAGAGTGGTGCTGGTTCAGCCCTTTCTTGTGGGTTTCCTTTCAGATTAAGGTGTGATTTGGAGGGAGGGGAAGAGGTTGTGTGGCAGAGGGATCAGCAGGCTGCCTCCTAGGAACTAAGGGTCTCCCTTGTGGGTGCTGAGCAGCGAGAATGTCTCCCAGGGGATTCATAATCAGGCAGGACCATGGAGGGAGGGGCGGGATGGAACCTGTGTCTGGATAATAGTTCTGGAACTCTGGTCAGATTGCCTCATCTGTCCTCAGCACCACCTTAGGAGTAGCACAAAAAGAGGGTAGGGAACTCGATCTTTTCTTGGTTGTCAAAGCCAAGAAAAGGGGATTTAAACACCCCCCCTTTTTTTTTCTGGAGCTGAGACCCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCCACCACTGAGCTAAATCCCCAACCCCCACGCCCCCTTTTTTAAAAGATTCATTTATTTATATGAGTGCTATGTAGCTATCTTCAGACACACCAGAAGAGGGCATCAGATCTTGTTACAGAGAGCTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCGTAACCACTGGGCCATCTCTCCAGCCCAGAAACCAACTCTTTACAGCATCCTGGGAATGAGCCAGTGAACCATTATTTGTGTAGCCCAAGGGCTAAGTGTTGTGGGCGGCTTTAATTCAGAAAGACCCCATGCTTTACCATGACATTCCCATGAGTAAAGGGTAAGGCTTACAACACAGGACTTTCCCCCTTCTCCCCTCTGCCTTCCCTTCTGTCCTCCCTGGTTGTCTCTCCCCAAGCTAAAGGACCCATCCCTCCTCCCACTGAGTCCCTAAGGCACTAATGGTCTTATCCCGTCCCCCACCAG
Seq C2 exon
TAAGCACGCCTTGGGAAGCCATGAGTATATCCAACACTGCCGCAAGTTTGACATCAACATCCGACTACAGCTGATGGAGCAGAAGGCTATCCGGAGCGACCTGGCCCGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938:ENSRNOT00000042125:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.8=100)
A:
NA
C2:
PF0079413=PI3K_rbd=PD(28.2=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]