GgaINT0141679 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1585622-1586078:-
Coord C1 exon
chr26:1585950-1586078
Coord A exon
chr26:1585794-1585949
Coord C2 exon
chr26:1585622-1585793
Length
156 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
TTGAGGTTCTGACCCCACAGCTG
3' ss Score
6.31
Exon sequences
Seq C1 exon
CAGCCCCTCCAGGATGGCAATGACCCTGACCCTTACGTCAAGACCTACTTGATGCCTGACCCCCAGAAAACCACTAAGAGGAAAACCAAAGTGGCCCGGAAAACCTGCAACCCTACCTACAATGAGATG
Seq A exon
GTATGGGGATGGCGATGGGGATGGGGATGGCAACGGGGCTGATGATGTTTGGGGATGGTGGTGGGGGTGGGAGTGGCAATGGGGATGGAGATGAGGATGGAGCTGGTGGTGATGGGGGGGCAGTTGGAGGCTGTGATTGAGGTTCTGACCCCACAG
Seq C2 exon
CTGGTTTACGATGGGGTGCCTCGGGGTGACCTGCAGCAACGGGAGCTGCGGCTGAGCGTGCTGAGCGAGGAAGGCTTCTGGGAGAACATCCTCCTTGGGGAGGTCGGCATCCGCCTGCGGGACCTCGACCTGGCACAGGAGAAGAAAGGCTGGTTCGCCCTCGGATCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.488 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.7=100)
A:
NA
C2:
PF0016825=C2=PD(38.9=60.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGACCCTTACGTCAAGA
R:
GCCTTTCTTCTCCTGTGCCAG
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]