BtaINT0111694 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:1981479-1982577:-
Coord C1 exon
chr16:1982449-1982577
Coord A exon
chr16:1981668-1982448
Coord C2 exon
chr16:1981479-1981667
Length
781 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCCCAATTTGGCGTCTGCAGCTG
3' ss Score
7.05
Exon sequences
Seq C1 exon
CAACTGCTCCAGGATGGGAATGATCCCGACCCCTATGTCAAGATTTACCTCCTTCCTGACCCTCAGAAAACCACTAAGAAGAAAACCAAAGTGGCCCGGAAAACCTGCAACCCCACCTACAATGAGATG
Seq A exon
GTATGTGGAGAAGGTGATGGGTGGGGCTGGGGCTGATAAACAACTGTGCCTGTTTTTGTAAATAAAGCCGTACAGGGACAGGGCCATTCCTGTGCATTTAAGTCTTGCCTGTGGTGCTTTCACGGTGTACCAGTGGGGTGAGTATGTGTGACACAGACCAAACGGTATGGCCTACAGAGCCTAGTATATTCTGCATTTGGCCCTTTATGCTAAAAGTTTGCTGATACTTAGGGTAGGGATTCCACAGCTGGGCGTGGTCTGTGGGGAGGAGGAGCCTGCTGGTCCTTTGCTGATAATGAACTGTGGCCCCGATGACGAGCCTTCTTTTGCTGGAACCCTGAGCTGAGAACAGGGTTCTTCGAAGGTCCCCTTGGGTACTGTATGCCTTCTGTATTCCCTCGGACTTTGCTTGGGGAGGTAAAGTGGTCTTACGCTCAGCCAGATCAAACCACCACAAACTATCATTCTTTTTTAACCAGAACATTTTTTCTTTTGTTAGGTTCACTTGTTCCCCCCAGTATTTATTTGTTATTTGGCTGTGCCAGTTCTTAGTTGTGGCACACAGGGTTTTCGATCTTCACTGAGGCATGTGAGGTCTTTAGCTGTGGCAGTGGAATCTAGTTCCCTGACCAGGGGCCGAACCCAGGCCCCCTGCACTGGGCACCTGGAATCTTAGCCACTGGTCCACCAGGCAAGTCCCTGAACCACCACAGATGAGCATCTCCCCCTTCCGTGTTCCCTCTCTCACTGCTTCCCTCTCTTCCCAATTTGGCGTCTGCAG
Seq C2 exon
CTGGTGTATGATGGAATCCCCAAGGGTGACCTGCAGCAGCGGGAGCTGCAGCTGAGTGTGCTGAGTGAGCAAGGGTTCTGGGAGAACGTGCTCCTCGGGGAAGTGCACATCCGCCTGCGAGAGCTGGACCTGGCCCAGGAGAAGACTGGCTGGTTTGCACTGGGATCTCGAAGTCCTGAGACCTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.7=100)
A:
NA
C2:
PF0016825=C2=PD(38.9=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCTCCAGGATGGGAAT
R:
TCATAAGGTCTCAGGACTTCGAGA
Band lengths:
318-1099
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development