GgaINT1021605 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1732339-1734029:-
Coord C1 exon
chr26:1733901-1734029
Coord A exon
chr26:1733745-1733900
Coord C2 exon
chr26:1732339-1733744
Length
156 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
TTGAGGTTCTGACCCCACAGCTG
3' ss Score
6.31
Exon sequences
Seq C1 exon
CAGCCCCTCCAGGATGGCAATGACCCTGACCCCTACGTCAAGACCTACCTGCTGCCTGACCCCCAGAAAACCACTAAGAGGAAAACCAAAGTGGCCCGGAAAACCTGCAACCCTACCTACAATGAGATG
Seq A exon
GTATGGGGATGGCGATGGGGATGGCGATGGCAACGGGGCTGATGATGTTTGGGGATGGTGGTGGGGGTGGGAGTGGCAATGGGGATGGAGATGAGGATGGAGCTGGTGGTGATGGGGGGGCAGTTGGAGGCTGTGATTGAGGTTCTGACCCCACAG
Seq C2 exon
CTGGTCTACGATGGGGTGCCTCGGGGTGACCTGCAGCAACGGGAGCTGCGGCTGAGCGTGCTGAGCGAGGAAGGCTTCTGGGAGAACATCCTCCTTGGGGAGGTCGGCATCCGCCTGCGGGACCTCGACCTGGCACAGGAGAAGATGGGCTGGTTCGCCCTCGGATCCCGCGGCCACGGCACGCTCTGAGCTCCAGGAATGGGCACCGGTGCCAGGAGGTGCCCAGAGGGACCGGAGCTGCCGATAGACATCTTCTTTCTTAAGTTTACCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTCCTTTGGGATATCTGTATTTTAATTTTTTTAATGACAACCTGTAGCGCACGGCCGGGCGCCGGGGCGGTGGTATCGCCAAGGTTGGTTTGGGGACGTCCGTCCCCCACTTTGATGCCATCGGGGCCGTTCCCAACGCAGGGGATTTGCTCCCAAAGGAGAGCAGCACGGCGGGATCCCATCCCTTAATGGGGGATCCCCGCCGACACCCCCGTGGCCACCTCCTTTCCTTCCCCCCCGCCTGGCCCTGCGCTGGGGTGCAGGCTTGGTGCCTGCGGTGCTTTGTTTACAGCGAGAGCTCCGTAAACGGACGAAATTGTTTCTCAGGATCGAGAATAATGAACTTAAACTTTATATTAAAAGTTGTAAAGACTGTATCGAGAGGGAGAGGGCCTGGGGGAGGTGGTATGGGGTACACCCCCCCCACCCCCCATCCCCCATAAGGGACCCTCCTGGCTGTAGCAGGGCAGAGTGAAAATAAAGCGATGAAGTGCACGGGGCGGCGTGGGACCTCGTGTGACCCTACAGGGCGGTGGTGGGATGGGGACAGGAATAGGGATGGAAACGGGAGCAGGACCCGGAGAGGAGCGTTGGGCTTGCCTGTGTAATAGGACATGGGAGGGGGTGGTTTTAAATTAAAGAGGGGACGGCCAGTTGAGGTGTGCATGATTTAGTGGTTGGGAACTCTGCCCACGGCAGGAGGTTGGAACGGGGTGATCTTTGGGGTCCCTTCCGACCCAACCGCGCTGTGACAGAACGTTCCCCGGTCAGTACGTTCCCAGTCGGCACAGCGCTGCTCCCCGCCACGCCGCCAGGGGGCGCAACACCGCGCAGCGCAGCGGCTGATGCAATCCCCACGCTGAGAGGTGGGCGGTGCCCTTCACCTCCCTCCGTGGGGGCGGGGCCTCAGCTCCGCCCAATGAGCGGCCGCGTAGCGGCGTGACGTCTCACGCATGCGCAGTCTCCCGCGACCCGCCTCTCGGGGCTCGCGCCGGCCGGGGGCGGATGTAACCGCAGCGCTCACTCCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.7=100)
A:
NA
C2:
PF0016825=C2=PD(38.9=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTACGTCAAGACCTACC
R:
AACCAGCCCATCTTCTCCTGT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]