DreINT0114240 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23354386-23356994:-
Coord C1 exon
chr11:23356866-23356994
Coord A exon
chr11:23354777-23356865
Coord C2 exon
chr11:23354386-23354776
Length
2089 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTTTTTCTCTCTTTTCACAGTTG
3' ss Score
11.35
Exon sequences
Seq C1 exon
CAACCTTTGCAGGATGGAACAGATCCTGATCCATATGTCAAACTGTACCTCCTACCAGACCCTCAGAAAACCAGCAAAAGGAAGACAAAAGCAGCCAGACGAACATGCAACCCCACTTACAATGAGATG
Seq A exon
GTGAGAAAACTGCGTCATTACATGACATCCATAAGGGATTTCTTTTTTTTTTTGTATCACAAATAAACACTTTAGCAGTACTGTTCATTAGGTCTGCTTAGGTGTAAGTTAGTGGTATATGGTTTTGTTGAAACTATGTTTGGTATTTGAAAATGTTTTACAGCAGGTTTCTGGTGGGTAAACGACATAATTCTGCAACAAAGTCTCGCCAATCAGGAAACCGTGAAAAGCAGATCCTGCTAAAATAATACTTGGTGCACAAACCAGTTTTACAAACCACTTTAAATGGCATCTCTGTCAGTCCTGCTACTGTACTGTATGTTCCCAACTATTGAAGTATTTATGTATGTAGATATTTTGAAAGTTTTTGGTTTAATACCAGAGGGTATTTTCAGAATAAACATATAAAAACATACTACTTTTATTTATTTTTATTTTACCTAAATTTTGCCAATTCATTTACATGATGGAGAGTTTTAGCGAATACGCTAACTTTTGGAAATTCAGTCACAAAGCATAATGTTTCTTAAAATCATTGTCATTGTCTCAATGCAAATTATAAAAATATCGTCACCGTAGAATTATCTATATTTCTATCTGACATTTTTATCAAAATTGAGTTATTGACATACTCTTATTAAATGACAAATTATTTACATTATAGGATGTTTTTTTTTTTGTAAGTACTTTACATTTTAAGACTTTTTTTATTTAAAAACCAAATATTACACACATACTGTTTGCTGGGAAATGCAAAAACAATATTTTTTTGTGAAAACAGTCTATAGGTCTATATCAAAAATGGTATATGCACACAGAATTTTAGGGTGCTTTTACACCTGTGAATCGATTATTTCTTTCTTTTTTTGTTTCGAAACAGGGATTAAAATTGCTATATTGTTGCTCTTTGTTCTTGGTGTGGTTCGCTTACACATGGCAAAGTTTCTAAATGGACCACAATAGCTAAAACAAGTCACGTACGAGTAAAATTTCCTCACATTGGTCAGAGTTTCAGTGTATATTTTAGAGTCCCACTCAGCTGTCATACATCCTTATTTTAATTTATGGAGGTGAGTAATAAGATATCATAAGCCAAAAGCTGCGCTTTAATTTTGAGTGGTGACACCCACAGACGTCGTCACCAAATATAAATCAGAGGTAAAACTTTCTCATACATAGCAGTTGGCTCATGCATTATAGGCTTTACATTACAGAAAGAAATAAACTAAGGAGTGTATTACAGTTCTAAAGAAAATTTCAAGTGATAAATGATCTTAAGTAAAACAAATACATTTATAGAGCTGGTATATAAGTAAACTATTTCACTCACTTGTGAAATGGAGGCCACTTGAATGTTTTGAGAGCACAATAAAGTGCACACAATATGCCATATTATCTGATAATTGTAAAAAATATTTCCAAAAGGCAGTTGTGTAGAGTGTAAAGCCACATAAAACGACACAAATACAATGTATATGCCGAGCTCAGCGGCTCATCATCTGGAATCAGCTCAGTTGACATGGCGGCGACCAGCGAGACCTAGCTCTCACTCAAGTGGCCACGCCCTTAATTATGCAGACCTAATATAACTTAATATAGACGAAACGAATGAGTTATACATAAATTCACCATATAGTCCATACTTGTATCTGTGTACAACTGAACAATGATTTTTGTGAAGATGTATAGTGATCAAATTGACATCGCCACCTACTGGCCTGGCATTCAAAGTAAAGCTTTTCTTTTTTTTTTTTTCATGTCTTAAAGTGAACATAAAAAACAAAACAGTAAAAGATTTCAGTCAGTAGTTTTATATTCATACATGGTTTTGAATTCATGGCATTTACAGCACTCCATATGATTGTATGTCTTACCTCAGTTATAGAAAAGAGTATAGGACTTTGGTTAAAGGTGTTGTACATTTTATTTTCAAATCCTTATGGTTCAAATGACGGTTTGCAATACTCTTATGACTTGTAAAACAATACTTTTTATTGGAGCAATATTTGTGTAATCAAGACTACTATAAAAATACTCAGCTGTTTTTTTTTCTCCAGTTTTCCTGACTACTTTTTCTCTCTTTTCACAG
Seq C2 exon
TTGGTGTATGATAAAATACCACGTGGCGATTTACAGCAGAGAACCGTTCACCTGCGGGTACTGAGTGAGGGTGCATTCTGGGAGAACACGCTTCTGGGTGAAACCATCATTCATTTGAAAGACCTGACCCCTGGCCATCGTTGGGTGGACTGGCATCAGCTTGGCACCAGAGGCTCCGACACAAACCGCTAGCATTTGCTGATTCCCAGCGGAAGTGAAGGATTTCACCGTTGTCTTTCACTGTGCATGTGTTTGTGTCTGTCTTTGCTTATGGGTAGGGAGTTGGAGATGCCCAGCTGCTTAGAAGGCTGTTTCCCCCAGTGGGGGTTTGTGTTTGTTGAATCTCCTTCCCAGGAGACGTGTAGATTTGGTGATGAAGGGTCATCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.7=100)
A:
NA
C2:
PF0016825=C2=PD(38.9=54.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]