GgaINT0142526 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1596217-1596539:+
Coord C1 exon
chr27:1596217-1596268
Coord A exon
chr27:1596269-1596464
Coord C2 exon
chr27:1596465-1596539
Length
196 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATGAGCCTCCATCCTCACAGCCT
3' ss Score
5.98
Exon sequences
Seq C1 exon
CCTGGTGGCATCCTGGTGGAGAAGGCACACAGCTCCCTGCTCTGCCAGGAAG
Seq A exon
GTAGGAGCATCTGGTACCACTGTGGGGACATGGGGCTGCTGGCCATAAGGGCCACCAAGCTGGAAGAACCATGGATGTGGGTCTCCTGGCCCAAGCCCATGGCATCCATAGAGGGATGGAGCATCAAGGGGTGGGCGAGGGTGCTATGGGGTCATGTCCACTGCCACCCCATTGCCATGAGCCTCCATCCTCACAG
Seq C2 exon
CCTCTGAAGAAGTGTCCCTGGAGCTTCCTGCCAACGTCTTGGAGGGCTCCCAGCGAGCTCACGTCACTGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCCTGGTGGAGAAGG
R:
CCATCACAGTGACGTGAGCTC
Band lengths:
122-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]