GgaINT0142526 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1690210-1690532:+
Coord C1 exon
chr27:1690210-1690261
Coord A exon
chr27:1690262-1690457
Coord C2 exon
chr27:1690458-1690532
Length
196 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ATGAGCCTCCATCCTCACAGCCT
3' ss Score
5.98
Exon sequences
Seq C1 exon
CCTGGTGGCATCCTGGTGGAGAAGGCACACAGCTCCCTGCTCTGCCAGGAAG
Seq A exon
GTAGGAGCATCTGGTACCACTGTGGGGACATGGGGCTGCTGGCCATAAGGGCCACCAAGCTGGAAGAACCATGGATGTGGGTCTCCTGGCCCAAGCCCATGGCATCCATAGAGGGATGGAGCATCAAGGGGTGGGCGAGGGTGCTATGGGGTCATGTCCACTGCCACCCCATTGCCATGAGCCTCCATCCTCACAG
Seq C2 exon
CCTCTGAAGAAGTGTCCCTGGAGCTTCCTGCCAACGTCTTGGAGGGCTCCCAGCGAGCTCACGTCACTGTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATCCTGGTGGAGAAGG
R:
CCATCACAGTGACGTGAGCTC
Band lengths:
122-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]