GgaINT0142528 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:1596624-1597024:+
Coord C1 exon
chr27:1596624-1596800
Coord A exon
chr27:1596801-1596942
Coord C2 exon
chr27:1596943-1597024
Length
142 bp
Sequences
Splice sites
5' ss Seq
GCGGTCAGC
5' ss Score
3.35
3' ss Seq
CCGTCCCCATCTCCACGCAGGTT
3' ss Score
9.54
Exon sequences
Seq C1 exon
GTGACATCATGGGCAACGCACTGCAGAACGTGGACCGCCTCCTGGCCATGCCCTACGGCTGCGGGGAGCAGAACATGGTGCGCTTCGCCCCCAACATCTACATCCAGCAGTACCTGGAGAAGAGCGGGCAGATGAACCCCGACATCCGTGCCAAGGCGCAGGGCTTCCTGCAGAGCG
Seq A exon
GTCAGCGTCCTCCTCCTGCCCTTCCTGCTACCCACAGGCACCCCTGCCTCCTTCCCCATTTCGTACCTGCACCCAGGGGTGGGCATCCTCTAGGGTCCCCCCAAAGACAGGTGTGTCAGTAGCCGTCCCCATCTCCACGCAG
Seq C2 exon
GTTACCAACGAGAGCTGCTCTACAAACACAGCGACGGCTCCTACAGCGCTTTTGGGGAGACAGATGACAGCGGCAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293:ENSGALT00000000384:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCATGGGCAACGCACT
R:
GTTGCCGCTGTCATCTGTCTC
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]