GgaINT0143048 @ galGal3
Intron Retention
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1433127-1440613:+
Coord C1 exon
chr27:1433127-1433281
Coord A exon
chr27:1433282-1440252
Coord C2 exon
chr27:1440253-1440613
Length
6971 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
CTGCTGCTTTCCCAGGGCTGCGC
3' ss Score
-4.16
Exon sequences
Seq C1 exon
TTGGTCGGGTTGAGCGTCTCCAATGGGAAGGACCAGCTGGTGGTCTTCCACACGAAGGACAACAAGGATCTCATCGTCTGCCTCTTCAGCAAGGAGCCGTCCAACGACAACAGGATTGGAGAGCTGGTGGGCGTCCTGGCCAGCCACTTCAAGAG
Seq A exon
GTCAGTGCTGCAAACTCACTATAGCCAGATCCAAAACTTCCCATGAATTCACGTTGGTGTCACCCTTGAGTTTTACCTGGGTTCCTTCACTATTACTGGGGTACCGGAGCATTTATCCTTTGTGTTTTTGAGGCCACACTTTGTTTACCCCTTCTTTCTCTATATGTGTTCATTAGGGCATGGATATCTGGGGACAAACACCACTGAGCATGCATTTTAGGTGTGTCAACTCAAACAGCACTTCAAGGTCAAGCTCTTAACGCCTAAAACTAAAACACAGCTCTTCCTTTCTCAAGTTGTTTTCCCCACCCCCAGTGTCAGTAGATGATTTAGTGCTCGAGCTGTAAAATGGCACCTGTTTCCCTGCAGATCACCGTGCAAAATCTGTTTTGGTGGTGGACAGAGCCCTGAAGTGGTTGCTGTGCGTGGAGCTCCAGGGAGGTGGAGCTGAACAAGCGAAAAGCGCCGTTGTTTCTTGCAGTGGGTTTGGAAGTGCCCAAAAGCTGCACAGCACTCATTGCATTGCAGATGCAGAATTAACCCTCTAGAGATGTGGTGTGAGCAGTGGACAGACCTACAGGGTTGATCTCTTGCTCCTGCAGAGCAGATCCGTGTGAGAATTGATGCTGATCAGCATCACGTGCAGCACTGGTTCTTGTGTTTCTCAGTATCACGTTCCAATTATGACCCATTCAGAGGAGTCTTTGTGGGTAAACGTTCATATAGAGCCATGGTGGGAAGGTGGTGAGAGTGAATTTAGGTTCTGTTAGGTTCCTAAAAGCCACTTTTTCTCTGATGTCTGGTAGAGGGTTATGGGTTTAATAGTAATGTACAGGAGCAGCTCCCGTTTAATTTCCCAAATACCCAGCTGCCACGCTGTCCCTCACCAAAGCAATACCTGCAAATCAAAAGAAAAATGAGAAAAATCATGTTTTCACTCAGTTTCAATTTCCTAAATGTGGAAAAGTCCCACTGGTGAATGGGATTAGCTGACCCATTGCTCGAGAGGCACGTTGGGAATTCCTCATGAAATAGGATTAGCAGTCACTGTGTGGCATCGTCTGGTTTCCCTGGATCCAGCAGGGAGGTCTTTGGGAAACCCAATGGCTGTGGGACCCTCCAAGGTGACTTGGAGCAGCCCTACAGCTGTGATGGGGGACAGCTTCCTTGGGGGACATCAGGCTCTTGTTGAGGATCCTCCCTGCGTGTGGTTGCAGCCATCCTTGGTACCGCCGTGGTGAGGTTTTAGCAGTGTTAAAAGAGCAGTAAAAGCAATCCCTGCAGAATTCTAGCAGAAAATCACTTGCCTAAGGATAATTTTATATTTCCTGTTGCACGCTGAGACCCGTCAGCCTGTTTTTAATCATTAGTGCACTCTGAATTAATTGTCTTTATCTCTGGCTTCTTAAACAGGCATGCGCTAAAGCCAGTTGCCTTGGCTCTGCAAAGCTATTGACCAAACAGCAGCTCATTAAGGGGGTGGCAGGTCAGTGCTGTGGATCCCACCCATGCTGGTCATCCTGTCCTTGAGCATGGCACGGCGGTGCCTTCAGGAAGGTGACAGCTTTCCTTATCACCTGCATTCAGTGTTGTACTGCTGCTCCACGTGGGCATTTTGGGACGTCAGCTGAGACGTGAGAGCAGTGAGGTTGGGTTTTTGTAGGTTTGGTGGGAAGCAGCTGAGGGTTGTTTGGTGGGTTGGGTTGTTTGGTGGTTTGGGTTCGTTGGGTGGATGGAAGGCAGCGCTCTGCAGATACCCATCTTCAGTCAGTTGTGTGGGGGTGGAGATGGGCATTTTGTACATTGCTTGATGCCATCCACTTAAAACAACAAAAACCAACCAAACAAAAACCAAAGAGATTCAACGTGTCAGAAGAGAAGGAAGAGGAACCCAAAGAAGAACCAAGGAGAAAGAAGAACCCAAAGTGGGATTTGGAAGTGCAGGGGTGGTGGCGCACACTTAACCCATCGTTCTTCTGAGGAACCATCACCCTCTGCACAAAAGCAGTGTGTTACAGCTGTGCCATCGCATCCGTCTGTCCCACCACATCCGTCTGTCCCACCACATCCGTCTGTCCCACCACATCCATCTGTCCCACCACATCCATCTGTCCCTTGAGCTGTGCACACGGTGATGGTTACCCATTGCTGACAGTGGGCGGAGGAGCGCTCCGTAACGGGGGGGTTCCCATCCAAAGTGGGCTTTCTGCGGGCTCGACGTGATCAAAAGGAGGTGAGGGCTGCTTCAGCAAAGCAAACTGCTTCTGAGCCGCTGCTCAACGCGGTTTGTCCTTTGTCACCAGTGCCAACCAACCCACGCTCAGCTCCCCTTCAGCTGTGCCAGTGGCTGACACCATTGTTAGGGCGGCTGCGGGCTGACAAAGGGGCAGACTTTATTCAGAGCAGATTCTCCCGTAACGTTTTTTCAGTGCCTGAGTGGAGCATAAATAGCTTTGTTTTGGTACAAGATTTCTATTCAGAGCTGTGCTTTGGGAGCCTGCAGTTTGCTGTCAGATTTGAGCACCAGATACTCATCTGCAGACTGGAAAAAATGGCTTAATTCCTCCACCATCATCTCTGTGGGTAATCCGAGGAAACTGAGCTGCCATTTGCCTTTAGCTGAGTTGCAGTCGTTGTCATCAGCTCTGCTGATGTCTGTGCAGGGTTGCTGACCACGCTGTAGTAACTTGGGTTAAGAAACGACAGATTTTCTTTGGAAAATACGTTGCATAGATAGCAGATCTGTTGTCTTTGTGCCCCGGAGTCCCCAGGCAGGATCTTAGCACTGTGATGAAGACTCTTGATGTTCTCTTTTAATTTTCTATAATCTGGATGGGGTTTCTTCAGCTGTTGATGCTCCTGACCTTTCCAGCCAGCTGTTCTGCCAGAAGGAGACTCATGAGGAGATTGGAAGAGGATTGTTTCTTTCTTTAAAACTCGTTTTCCCAGTGCTGCAGCACTGCTCATTCACCATCTCCAAAATGGGTCCTGAGCCCCCGACCGGGGAACCCCATCTCACGTTCCAAAGTGGTTTCTTACAGCGCTTCTCAGATGACTTTGTCTCCTGCAGTCGTGGCTTTGCGGTGAGGATGACCTGAGCTCTGGACACAGTTGGGCTCTCAGGAGGCGAAGTTCGATCTCGAACTCATGAATCCTTTCTTTGAGTAGTTGACCTCTAAATCTAGAAGTGAATTGTTGTGTCTGATCACACAGCGGTAGCAAGTTGTTGTGTTCTGTGATATTCCTGTGGGTATGGTGAGTTCTGCTCCTGGGATGGAGGTCTTCATAGAGAGGAGCCATTGGAGCTTGAGGTGCATTGCAGGAGGTTGGCTTTCCCCAGGGTTGGTTGCTTGGCGCTCTCTGAAATGATTTTATGTAGGGATGTTGAGGAAGTGTTCTTTAGGGCACTTCAAAAATCAGAACTCACAGAATGGTTGGGCTGAAGGGACCTCAATGACCGCCCAATTCCAGCCCTCCTGCTTCAGAAATTGAGAACCAGGTTTCTGCAGTAATTATAATTCCTATGAGAGCGGCTCCGACCCGTCGTGCCCGTTTGGTACGTTGCACACTGTAGTGGTGCTTTGCCTTATTGGCCTTGAGCACAGTGCTCTCTGAGGTGCCCATCTCCATGCAGCGGATGCACGGGGCTCAGATCCATCCATTCCATTCTTGGCTGTCCACGGTGCTGTGGTGAGACTGGAAGGGTTCCCCATCTCCTGGATGGACGCGTTGGGCTGAAGCAGATAAATCCTCTCTGTTCTTGGGCTGTCAGCGGGGGGAGGGTGAAATTGGGGGGGTTATTTGTGATGTGGGGGATAATTAGCATTTAGGAGCTGCGATACGTGGTTTGCAGCATCCTAGAACATGAAGATCCAACCCCATCCTGCTCCTGTCTGATGTTCCAGGTGCCATCACCTTCTGAATGTGAACGTTTCAGTATTTCAGAGCACGTAACGTTTTCTCTCCTATTATCACACTGTCTGAGGACCCGTCTGCCCCAGGCAGCTGTCCTGGCACCCATGGGCCGTGTGCTGGGAATCTCCACCATCTCAGCCATACCGACCTCTGTGTTTGGGCTTTATTTGGGGAAGGGGCTGTGCTGTCTGCCTGGAGCTTGAGAAGGGGTGCTGTGCTGGGAAGCAGGCTGCTGGGGGGAGGTAATCAGCTGCGCTCCAGAGGTTGGAAACAGTGGGAAGAAAAACGCATTTTGCTCTCGGAATCTTCAAATCTTTGATAATTTTATCAGAAACATCTGTTTTTTCCCCCACATTCTTGCATAAAGTATCATAAAAGTACACATTAACACATTTTTTTCCTTCTAGTTTTCCAGTTGGTGTCATTGGCAGAGCCCAAATCTTCTCTTTTAAGCCTTCTCTCCTTCTATGTGTCTCTTGCCCGTGTGGTCTCATCGTCTGACCTCACTGTTCCAACCGATCTCAAAGAGGGGCTGTGTTTCTGAGGCTGCTCTCCCAGCAGTGATCAGTGACTGTGGTGCGTAACGATGGTTTCATGGGTTGGGTTTGGCTCTCTGGGAATTTTGGAGCATCAGATTGATGAAATCTGGATGTGGTGAAGAGCACAGCGTGACCCGTGGTGTGTCTGAAACCCAGAGGGTCGCAGGATATCCCGTGGTGGAAGGGATCATTGATCCCATCCATCCAACCCCGACGTATGAGGAACTTGATTTGGAGCAGGCTGGATTCCTCACTGCAGTCACCGGGCTGTGCCAAAACCCAACTAAAGCAAAAAAAGAGAAACTCAGCCTTTCAGTTCATGACCAACGATGGCTTTGATTGTGTCTTTCTGGCCCACGAAAGAAAGCACAGCCTGCAGAATCAAACTCACAGCACAAAATAACGTTGATCCACCTCATATATTGAGCCTGGTGCGTTGCTCTCCTTATAACCTCTGCTTTCCCAGCTTGTGCTCCTGCACCCCAATACCTGTTGGGTGTTTTGTCCACGGCTCTGCTCCGGTGTGCCAAATTGTTGGGTTTTGTGTTGGTTTTATGTATCAAAAAGATTTGCATGGGTGTCGTTATGAGGAGCTCTGTGGTTTAATGAGTTGGCGTCGTTTCAGGCCTGCAACCCCTCATTCCAGGCGGATTCGCTGTTGCTTTAACGTTGCTTTTTTTCCTTCCCCTTTTCCAAAGGAGAGGTGTGAGGATGATCCGAAGTAAATTTCCTTGTAAGAATGAGGCAGTTGGCTCTGCCTGCAGCTCAGTGCCACGGTGCAAATGGTGCTGCGCGGTGCTCAATTAGGTGGGAAGGCTGAAGGGAGCCAAGAAAGGAGGGAGGCGGTGTGAAATGCCAGTTGTGCACGCGGTGCCCAGCAGCAGAGCCGAAGGAGTGGCGCTGCGGGGGGCGGTGGGGTTGGGATTGGGGATCTGAGGTCTTTTCCCACCATAATGGCTCTCTGGGTGGGCACAGTGGGGGTGGGTTGACGTGATGACCGTGGAGGTCTTCCCCACCCCCAGTGGTTCTGTGGGTGGGCACGGGGGGTGGTTGGGGTTGGACTTCATGGTCGCAGCAGTCTTTCTCCCCACTGCCTTTGCAGAACCCCCATTGATGTTTCTCTGCTCTCTCTCCCCATTCGTTCTGCCCCTCCTGCAGAGCTGCACACTGCAGTGTTAGCAGCAGTGCTCACAGATGGCCGGGGCCGTTTCTGCACCGCTTGCTCTGCGTTTCCCCCGAGGTGTTGGGCTGTGCTCAGAGCTCCCCCATTTCACGGACCAACGCTCTGCTTCCGCTCGGAGTCATCCCCTCCCTGCTGCTTTCCCTTTGCCCAGCATTTCCCCACCGCTGCCCAGCTCTGCGTGGGGCTGAGATGCAGCTCTGCCTCTGCTGCCGTCGGTTCCTCGCTCGGTTGGACGTGCAGAGCCCCGATGACTCCCAGGGGGTGTTTTCACCACCGAAATGCCTCACTGAGCTTCCAGCATCACGGCTGGGCCCCCTCCATCTCACACTGGTGGTTGCGTTTGGCGACCTTGGAGATGGTGTGATGCTCTCTGATTCTGTGAGTGGGCGCAGCGGGATGGGCCGGTGGTTGGATGTGGGGGCCTTGGAGTTCTCCCTGGGGACTCTGAGAAAGCCTGCACTCCTCTGAGCACTGGCTGGGCTTTAGGAACGATGTGCCAGCGTGCTCCTGCATGGCAGAGCTGAGCAGGATGCGAACTCTGATCCGCAGTGGCACTGCGCATCTCCTGCACGTCTGAAAACGGAACCCACCTCATTTCTCCCTGCTCCCGCAGCCACAGCGCGGTTCGTGTCCATGGGTTGGGACACTGTGCACGGCTGCACACTGCAGGCTCTGCTCAGGGGCGCAGCTCAGCCCTGCAGCACTCCGTGCTCCGCTGCCGTGGGAGCAGTGCGGGCGCTGAGCTGTGTGGTCCCGTTGGGCTTTGGGCACCGCTGCAGTGAAGCTCTCCTTCTGGGCTCGGCACACACCCCCCCCCCGTCTGCATTTCCTTCCCCACTCTCCCCGGGTTTTGGGTTTGCTTCCTCCTCACGCACTGCTCAGCGGGGCAGGGGGGAGTGCTTGGAGGCCAATTTCCCCATCACGAGAAACCAAGGGTGGGAACAGGAGCCAGAACGGGGAGGGGGCCGTGCTGCAACCCCATTCAATTCCGTACCCCCCCCCGTCTCCCCACACCCCCTGCTTTCCAATCCTGTGTCCCCCGCGTGCGATGCCCACCTTGCTGCTGTGCACCGTTTGCTCCCGTGCTGTCGGATGAGGGGCAAACGAAAGCAGCACCAAAAAGACTCTTGGTGGTCATCTGTAGCACTGACCTACTTAGACCCCCTTCCCCTCTCTCTGAGCAGGCTGGAGCGCTGGCTTCAGCCTGCGAGGAGCGGAGAGCAGAATGGTAATGAATGTGAATGATGGGCCCTCGTTTGTGCGGCCGCAGCCGATGAGAAATGGTTTTGAGATTTCCTTCTTTCTTTCTTCTATCTGCTGCTTTCCCAGGGCTG
Seq C2 exon
CGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTCCCTCCAGGAGGTGACAGTAAGAATGGAGATGGGGGCAGAGGAGGTAATTAGCTCGGGCGTACTGGTAAAACCACTCAGCGTCTATGGAAATGAGTTCAGTTTCTGGCTCCAGGGCGATGGCTTAAAATTAGACTGTAAATAATGTTCTGTTCTCTTTTAAGGAGCGAGGAGGAGCTGTAGGCAGCGTGCGGGCCGTGCTGTGCGCAGCAGTGGGTGGGGAGGAGAGCGCATCCCAATGCCACCGCGCTGCCCTGCGCTGCCGGTCCTCAGCACTGCTCCCATGGGGCAGGGAAAGGGGGGAGATGGGCAGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674:ENSGALT00000000956:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF060178=Myosin_TH1=FE(32.5=100)
A:
NA
C2:
PF060178=Myosin_TH1=PD(1.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]