GgaINT0143094 @ galGal3
Intron Retention
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1349173-1349570:+
Coord C1 exon
chr27:1349173-1349336
Coord A exon
chr27:1349337-1349468
Coord C2 exon
chr27:1349469-1349570
Length
132 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ATCTCTGCCTCTGCCCACAGGAG
3' ss Score
11.87
Exon sequences
Seq C1 exon
TGTCCCTGGACGGCGTGTTGCAGGACGTGCGGAGCCTGCAACAGGGCATGGAGCTCACCCGCAAGGAGTTCATGCGGCAGGATGACAGCCTTGTGCTCAAGGAGTTCCTCAAGGCCAACACGGAGCTGATGGAGAAGCTGCAGGCTGACAGCAAAACTGCTAAG
Seq A exon
GTGGGTGTCGGGCCTCCAGCCCTGTGAGGGGGTACTCCGGGGTGCTCTCTGCTCACACCTGTGCCCCATGGGGGAGGCTGTGGGAGGGCTGCTGCCAGCTCCCAGCCCCCAGATCTCTGCCTCTGCCCACAG
Seq C2 exon
GAGGCCTATGAGTCAGCCGTGGAATACTTCGGGGAGAACCCCAAGACCAGTCCCCCCACTACTTTCTTCCCCATGTTCATGCGCTTCATCAGAGCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694:ENSGALT00000040749:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(16.8=96.5)
A:
NA
C2:
PF0218118=FH2=FE(9.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGACGGCGTGTTG
R:
GGCTCTGATGAAGCGCATGAA
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]