HsaINT0065110 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45245253-45245733:+
Coord C1 exon
chr17:45245253-45245416
Coord A exon
chr17:45245417-45245631
Coord C2 exon
chr17:45245632-45245733
Length
215 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CTGACAGGCTGTGCCCACAGGAG
3' ss Score
5.96
Exon sequences
Seq C1 exon
TGTCCCTGGACAGTGTCCTGGCGGACGTGCGCTCCCTGCAGCGAGGCCTAGAGTTGACACAGAGAGAGTTTGTGCGGCAGGATGACTGCATGGTGCTCAAGGAGTTCCTGAGGGCCAACTCGCCCACCATGGACAAGCTGCTGGCAGACAGCAAGACGGCTCAG
Seq A exon
GTGCGCCAGGGCTGGCCTCACCTGGAGGTGGGGCATGTAGGAGCACTAGATAGCACAGCCTGGAGGGGTGTGGCCGTAGCTGGGACCCCTTGGGGGGATGCAGCAGGAATGAGGGGCCACCCTGCCTGGGAGGAGCTCAGATCAGGTGGCCAGTGTCCTGAGGGGTACAGGCTGTGAGAGGTCTAAGCTGGGGGGCTGACAGGCTGTGCCCACAG
Seq C2 exon
GAGGCCTTTGAGTCTGTGGTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGGCCTGTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.1=100)
A:
NA
C2:
PF0218118=FH2=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCGAGGCCTAGAGTT
R:
TGTAGGCCTTAATGAAGCGGC
Band lengths:
229-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development