HsaEX0026031 @ hg38
Exon Skipping
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45245253-45245973:+
Coord C1 exon
chr17:45245253-45245416
Coord A exon
chr17:45245632-45245733
Coord C2 exon
chr17:45245878-45245973
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGACAGGCTGTGCCCACAGGAG
3' ss Score
5.96
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
TGTCCCTGGACAGTGTCCTGGCGGACGTGCGCTCCCTGCAGCGAGGCCTAGAGTTGACACAGAGAGAGTTTGTGCGGCAGGATGACTGCATGGTGCTCAAGGAGTTCCTGAGGGCCAACTCGCCCACCATGGACAAGCTGCTGGCAGACAGCAAGACGGCTCAG
Seq A exon
GAGGCCTTTGAGTCTGTGGTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGGCCTGTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAG
Seq C2 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAAAAAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922_MULTIEX2-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.017 C2=0.754
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.1=100)
A:
PF0218118=FH2=FE(10.1=100)
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGCGAGGCCTAGAG
R:
CTTGGGTGCTGGGGGCTC
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development