BtaEX0014794 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45518056-45518816:+
Coord C1 exon
chr19:45518056-45518219
Coord A exon
chr19:45518472-45518573
Coord C2 exon
chr19:45518721-45518816
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGACAGCCTGTGCCCACAGGAA
3' ss Score
7.43
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TGTCCCTGGACAGCGTGCTGGGGGATGTCCGCTCCCTGCAGCGAGGCCTGGAGTTGACCCAGCGGGAGTTTGTGAGGCAGGATGACTGTGTGGTGCTCAAGGAGTTCCTGAGGGTCAACTCACCTGTCATGGATAAACTGCTGGCAGACAGCAAGACAGCTCAG
Seq A exon
GAAGCCTACGAGTCTGTGGTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCCTCCATGTTCTTTTCCCTCTTTAGTCGCTTCATCAAAGCCTATAAG
Seq C2 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAGAAGGAAGCAGCTGCCCAGGAGGCAGGCACTGACACTGCAGGGAAAGGGGAGCCCCAAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.740
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
PF0218118=FH2=FE(9.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGGACAGCGTGCT
R:
CTCCCCTTTCCCTGCAGTGTC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development