HsaEX0026031 @ hg19
Exon Skipping
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43322620-43323340:+
Coord C1 exon
chr17:43322620-43322783
Coord A exon
chr17:43322999-43323100
Coord C2 exon
chr17:43323245-43323340
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGACAGGCTGTGCCCACAGGAG
3' ss Score
5.96
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
TGTCCCTGGACAGTGTCCTGGCGGACGTGCGCTCCCTGCAGCGAGGCCTAGAGTTGACACAGAGAGAGTTTGTGCGGCAGGATGACTGCATGGTGCTCAAGGAGTTCCTGAGGGCCAACTCGCCCACCATGGACAAGCTGCTGGCAGACAGCAAGACGGCTCAG
Seq A exon
GAGGCCTTTGAGTCTGTGGTGGAGTACTTCGGAGAGAACCCCAAGACCACATCCCCAGGCCTGTTCTTCTCCCTCTTTAGCCGCTTCATTAAGGCCTACAAG
Seq C2 exon
AAAGCTGAGCAGGAGGTGGAACAGTGGAAAAAAGAAGCCGCTGCCCAGGAGGCAGGCGCTGATACCCCGGGCAAAGGGGAGCCCCCAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.018 C2=0.787
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
PF0218118=FH2=FE(10.1=100)
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGCGAGGCCTAGAG
R:
CTTGGGTGCTGGGGGCTC
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)