MmuEX0019385 @ mm9
Exon Skipping
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103057999-103058709:+
Coord C1 exon
chr11:103057999-103058162
Coord A exon
chr11:103058392-103058493
Coord C2 exon
chr11:103058629-103058709
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGATGGGTTGTGCTTGCAGGAG
3' ss Score
7.15
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
TGTCCCTGGACAGCGTACTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGCTGACGCAGAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAGGAGTTCCTAAGGGCCAACTCTCCCACCATGGACAAGTTGCTGGCAGACAGCAAGACAGCTCAG
Seq A exon
GAGGCCTATGAGTCTGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATGTTCTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAG
Seq C2 exon
AAAGCGGAACAGGAGGTCGAACAGTGGAAGAAGGAAGCAGCTGCTGATACCTCAGGCAGGGAAGAGCCTCCAACACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-'27-28,'27-26,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.035 C2=0.726
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
PF0218118=FH2=FE(66.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGACAGCGTACTGGG
R:
CTTGGGTGTTGGAGGCTCTTC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: