RnoEX0036381 @ rn6
Exon Skipping
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91279339-91280034:+
Coord C1 exon
chr10:91279339-91279502
Coord A exon
chr10:91279719-91279820
Coord C2 exon
chr10:91279954-91280034
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGATGGGTTGTGCTTGCAGGAG
3' ss Score
7.15
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TGTCCCTGGACAGTGTGCTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGTTGACACAAAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAAGAATTCCTGAGGGCTAACTCTCCCACCATGGACAAGCTACTGGCAGACAGCAAGACAGCCCAG
Seq A exon
GAGGCCTACGAGTCCGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATGTTTTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAG
Seq C2 exon
AAAGCAGAGCAGGAGGTGGAACAATGGAAGAAGGAAGCAGCCGCGGACACCTCAGGCAGGGAAGAGCCTCCAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207-'30-35,'30-33,31-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.029 C2=0.741
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
PF0218118=FH2=FE(9.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGACAGTGTGCTGG
R:
CTTGGGTGCTGGAGGCTCTTC
Band lengths:
243-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]