GgaEX1025255 @ galGal4
Exon Skipping
Gene
ENSGALG00000000694 | FMNL1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5F3R6]
Coordinates
chr27:1404240-1404978:+
Coord C1 exon
chr27:1404240-1404403
Coord A exon
chr27:1404536-1404637
Coord C2 exon
chr27:1404880-1404978
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCCTCTGCCCACAGGAG
3' ss Score
11.87
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGTCCCTGGACGGCGTGTTGCAGGACGTGCGGAGCCTGCAACAGGGCATGGAGCTCACCCGCAAGGAGTTCATGCGGCAGGATGACAGCCTTGTGCTCAAGGAGTTCCTCAAGGCCAACACGGAGCTGATGGAGAAGCTGCAGGCTGACAGCAAAACTGCTAAG
Seq A exon
GAGGCCTATGAGTCAGCCGTGGAATACTTCGGGGAGAACCCCAAGACCAGTCCCCCCACTACTTTCTTCCCCATGTTCATGCGCTTCATCAGAGCCTACAAG
Seq C2 exon
AAAGCAGAGCAGGACATCGAGCTGTGGAAGAAACAAGAGGCTGCGGCCAAGGAGGCAGAGTCCAGCCAACCTGGCAGTGGGGAGCAGCTTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694-'27-35,'27-34,28-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.137 C2=0.677
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(15.1=100)
A:
PF0218118=FH2=FE(9.2=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGACGGCGTGTTG
R:
GTCAAGCTGCTCCCCACTG
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]