MmuEX0019385 @ mm10
Exon Skipping
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103196685-103197778:+
Coord C1 exon
chr11:103196685-103196848
Coord A exon
chr11:103197078-103197179
Coord C2 exon
chr11:103197658-103197778
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTGATGGGTTGTGCTTGCAGGAG
3' ss Score
7.15
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
TGTCCCTGGACAGCGTACTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGCTGACGCAGAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAGGAGTTCCTAAGGGCCAACTCTCCCACCATGGACAAGTTGCTGGCAGACAGCAAGACAGCTCAG
Seq A exon
GAGGCCTATGAGTCTGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATGTTCTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAG
Seq C2 exon
TCTCCACCCAAGGCCCGGCGACAACAGATGGACCTCATCTCTGAGCTAAAACGGAAGCAGCAGAAAGAGCCACTCATCTACGAGAGTGACCGAGATGGGGCCATCGAGGACATCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.082 C2=0.765
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
PF0218118=FH2=FE(66.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGAGGTCTGGAGCTGA
R:
GTGATGATGTCCTCGATGGCC
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types