DreEX6017974 @ danRer10
Exon Skipping
Gene
ENSDARG00000055713 | fmnl1a
Description
formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
Coordinates
chr3:37087552-37089601:+
Coord C1 exon
chr3:37087552-37087715
Coord A exon
chr3:37087811-37087912
Coord C2 exon
chr3:37089503-37089601
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTCTCACAACAAGGAG
3' ss Score
5.58
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TGTCTCTGGACGGTGTTCTGCAGGATGTAAGATCTCTGGAAAGAGGCATGGAAGGCACCAAGAAGGAGTTTATGGTGCAGGACGACATCCCGGCACTCAAAGAGTTTGTCAAAGCCAACAGTGATGTATTAGACTCCCTCGTTAAAGATGGCAAAACAGCACAG
Seq A exon
GAGGCATATGCGGCTGTGGTGGAGTATTACGGAGAAAACCCCAAGACGACACAGCCTTCCATGTTCTTCCCAATCTTTGCAAGGTTCATCAAAGCTTATAAG
Seq C2 exon
CAAGCGGAACAAGACAACGAACAGAAGAAGAAGCAGGAAATGGCAGCAGAAGAACAGGCAACCCCTTCCCCAAAAAAGAAAGAGGGCACCCCTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055713-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.939
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.8=100)
A:
PF0218118=FH2=FE(9.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGTGTTCTGCAGGATGTA
R:
GGGGTGCCCTCTTTCTTTTT
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]