GgaEX1025255 @ galGal3
Exon Skipping
Gene
ENSGALG00000000694 | FMNL1
Description
NA
Coordinates
chr27:1349173-1350516:+
Coord C1 exon
chr27:1349173-1349336
Coord A exon
chr27:1349469-1349570
Coord C2 exon
chr27:1350418-1350516
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCCTCTGCCCACAGGAG
3' ss Score
11.87
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TGTCCCTGGACGGCGTGTTGCAGGACGTGCGGAGCCTGCAACAGGGCATGGAGCTCACCCGCAAGGAGTTCATGCGGCAGGATGACAGCCTTGTGCTCAAGGAGTTCCTCAAGGCCAACACGGAGCTGATGGAGAAGCTGCAGGCTGACAGCAAAACTGCTAAG
Seq A exon
GAGGCCTATGAGTCAGCCGTGGAATACTTCGGGGAGAACCCCAAGACCAGTCCCCCCACTACTTTCTTCCCCATGTTCATGCGCTTCATCAGAGCCTACAAG
Seq C2 exon
AAAGCAGAGCAGGACATCGAGCTGTGGAAGAAACAAGAGGCTGCGGCCAAGGAGGCAGAGTCCAGCCAACCTGGCAGTGGGGAGCAGCTTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000694-'11-14,'11-13,13-14=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.103 C2=0.667
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(16.8=96.5)
A:
PF0218118=FH2=FE(9.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGACGGCGTGTTG
R:
GTCAAGCTGCTCCCCACTG
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]