RnoINT0061621 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91279339-91279820:+
Coord C1 exon
chr10:91279339-91279502
Coord A exon
chr10:91279503-91279718
Coord C2 exon
chr10:91279719-91279820
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGATGGGTTGTGCTTGCAGGAG
3' ss Score
7.15
Exon sequences
Seq C1 exon
TGTCCCTGGACAGTGTGCTGGGAGACGTGCGCTCCTTGCAGCGAGGTCTGGAGTTGACACAAAGAGAGTTTGTGCGGCAAGATGACTGCCTGGTGCTCAAAGAATTCCTGAGGGCTAACTCTCCCACCATGGACAAGCTACTGGCAGACAGCAAGACAGCCCAG
Seq A exon
GTGAGCTGGAGGGTAACACAGAACATTAGCCACTGAAGTCTTAGGGTGGTGGAAGGAGCAAAGACCAGGAGGGGTGTGGCCCCAGGCAGAACCCTGGGATGAACAGTAAGGGACCATCCTGTGTGGAAGAACAGAGATGTGGTATCCCAAAGGGCACAGCGCATGCTTAGGATCCAAGGGGCCCAAGCTATCTTGGCTGATGGGTTGTGCTTGCAG
Seq C2 exon
GAGGCCTACGAGTCCGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATGTTTTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(14.7=100)
A:
NA
C2:
PF0218118=FH2=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGTGTGCTGGGAGA
R:
CTTGTAGGCCTTGGTGAAGCG
Band lengths:
261-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]