GgaINT0143411 @ galGal4
Intron Retention
Gene
ENSGALG00000001574 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr27:3975565-3976721:+
Coord C1 exon
chr27:3975565-3975619
Coord A exon
chr27:3975620-3976611
Coord C2 exon
chr27:3976612-3976721
Length
992 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTGCCTTTGCTTCCCCAGGGT
3' ss Score
11.12
Exon sequences
Seq C1 exon
AGATGTGAACTGTGCCCCCACAAAGATGGAGCCCTGAAACGGACCGACAACGGAG
Seq A exon
GTGAGTCGCTCTGTGCAGAGCATTGGGATCCCAGCAGCTCTCCTTTGAGCTGCACCAGCAGCAAGATGAAGCTGGAGGCCCAAAGGATGAGAGCATTCTGCCCCTTCTCAGCCTTCAGAAGGGCTTCCATGCCTGCCTGCCATGCGCCTTGATAGTGGTGAGGGAGGTCTTTATTGGTGAGAGAGAATATAACCTCAGTGCCATAGCATTCCCATGCTGGGGGATTGCTTTGTAATGGCATAGCATCTTCCTGCTGTCATCGTGTGGTTTGGGCAGGTCTGTGCAGACAGGCACACGAGGTGTTATACACGTGGCACTGTACACACACAGCCCGAGTACCGTGTGATTCTGTAACCATAGAGCCCAGCTCTGCCCATCCCAGTGAGCCCACCCTCATTCGAACCGATTGCTGTCAGTGCAGTCAGTGTACCAGCGTGGATCAGCCCCCAAAGCCTCCTGACCTTCAAGCTTTCTCGGTCCTGTCCTGACCAGATGGAATTTCAGCTTACACATCTGATTTGGGAAGCGTCTCAGACTGTAACCTCGCTTGGCTTGGTGAAAAAGAGCCTTCCTCAGCCACTGATAGCAGCCAATAAAGGGAGCTTTGTTCCCACTGGCATGGCACTGCGTGTCAGACTCGCCCCCATCAGCATCGCTTACTGCTGGGATGCTGTCCCTGGGCTTGGTTAGATCTGCAGCATTGGGCTGTGAGTCCTCCGGGTGCTCCGAAGGGCACTGAGTGCTGAGCGGTGCTTTTCCCCAAAGAAACCTCTGCTTTCTCCTTTGTGTCTGCCTATCCTTCTCCCACGGAGGCTCTGATTCCTAACCAAGTTCCAACAAGCACCGTTTCAAATCTAATATCTAACTCGAGTTGGCTTCCTTCCTATATTCTCTTCCTCCTTTCCCTCCCGTGCCTGTGTGCAGCCCTACGTGCGCAGAGGGCTCTCCTGTGCTGCAGCACGTTTCCCACTGCTCTGCCTTTGCTTCCCCAG
Seq C2 exon
GGTGGGCCCACGTTGTGTGTGCTCTGTACATCCCAGAGGTGCAGTTTGCCAACGTGCTGACCATGGAGCCCATCGTCCTGCAGTACGTTCCGCACGACCGCTTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138321=zf-HC5HC2H_2=PU(24.6=93.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]