HsaINT0103737 @ hg38
Intron Retention
Gene
ENSG00000275023 | MLLT6
Description
MLLT6, PHD finger domain containing [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr17:38707486-38707872:+
Coord C1 exon
chr17:38707486-38707540
Coord A exon
chr17:38707541-38707762
Coord C2 exon
chr17:38707763-38707872
Length
222 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTACCCCCACACTGCCCCAGGCT
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGGTGTGAGCTGTGCCCACACAAAGACGGGGCATTGAAGAGGACTGATAATGGAG
Seq A exon
GTGAGGCGGGCTCATCTGCTGAGGTCAGCAGGGCCCCCTGAGCAGGGTCTGGGAAGGCAGGAATGGACTGAGTTGGGGTGGAGGCCGGGTTTCCTTTCCCTGGCTGGCGCTGGAATCTGATGGGAAGGCTGTGGAGGAGGGAACAGTCTGCAGCGTGGGGTCATAAGGGGTGGAGTCTCCGGCTTGCCATCTGCAGCTGAGGCTACCCCCACACTGCCCCAG
Seq C2 exon
GCTGGGCACACGTGGTGTGTGCCCTCTACATCCCCGAGGTGCAATTTGCCAACGTGCTCACCATGGAGCCCATCGTGCTGCAGTACGTGCCTCATGATCGCTTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000275023:ENST00000621332:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGAGCTGTGCCCA
R:
TTGTTGAAGCGATCATGAGGCA
Band lengths:
164-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development