HsaINT0103737 @ hg19
Intron Retention
Gene
ENSG00000108292 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:7138]
Coordinates
chr17:36863739-36864125:+
Coord C1 exon
chr17:36863739-36863793
Coord A exon
chr17:36863794-36864015
Coord C2 exon
chr17:36864016-36864125
Length
222 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTACCCCCACACTGCCCCAGGCT
3' ss Score
4.87
Exon sequences
Seq C1 exon
AGGTGTGAGCTGTGCCCACACAAAGACGGGGCATTGAAGAGGACTGATAATGGAG
Seq A exon
GTGAGGCGGGCTCATCTGCTGAGGTCAGCAGGGCCCCCTGAGCAGGGTCTGGGAAGGCAGGAATGGACTGAGTTGGGGTGGAGGCCGGGTTTCCTTTCCCTGGCTGGCGCTGGAATCTGATGGGAAGGCTGTGGAGGAGGGAACAGTCTGCAGCGTGGGGTCATAAGGGGTGGAGTCTCCGGCTTGCCATCTGCAGCTGAGGCTACCCCCACACTGCCCCAG
Seq C2 exon
GCTGGGCACACGTGGTGTGTGCCCTCTACATCCCCGAGGTGCAATTTGCCAACGTGCTCACCATGGAGCCCATCGTGCTGCAGTACGTGCCTCATGATCGCTTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108292-MLLT6:NM_005937:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138321=zf-HC5HC2H_2=FE(15.3=100)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(30.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGAGCTGTGCCCA
R:
TTGTTGAAGCGATCATGAGGCA
Band lengths:
164-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)