RnoINT0092946 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85608544-85608904:+
Coord C1 exon
chr10:85608544-85608596
Coord A exon
chr10:85608597-85608794
Coord C2 exon
chr10:85608795-85608904
Length
198 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCACACCGCCCCGCCCCAGGCT
3' ss Score
4.71
Exon sequences
Seq C1 exon
GTGTGAGCTGTGCCCACACAAAGATGGGGCATTGAAGAGGACTGACAATGGAG
Seq A exon
GTGAGGGGAACCCTGAACACCTGAGGTCAGCCAGCGCCCCCTCCCCCAGCAGGCGTGGGGTGGAGACTGGCTTTCCCTGCTCTGGTTGGTACAGGAAGGTTGTGGACGCAGGGGACAGTCTACGGCTTGGTGTTGGGAGGAGTGGGGTCTTGTGCTTGCCGTCCTGCTGAGGCCGGTCCCCACACCGCCCCGCCCCAG
Seq C2 exon
GCTGGGCCCATGTGGTGTGCGCCCTGTACATCCCGGAGGTGCAGTTCGCCAACGTGCTCACCATGGAGCCCATTGTTCTGCAGTACGTGCCTCACGATCGCTTCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF137711=zf-HC5HC2H=PU(19.0=93.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGAGCTGTGCCCACA
R:
TTGTTGAAGCGATCGTGAGGC
Band lengths:
162-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]