GgaINT0144861 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2381597-2382112:-
Coord C1 exon
chr28:2381961-2382112
Coord A exon
chr28:2381890-2381960
Coord C2 exon
chr28:2381597-2381889
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CCTGACCCGCGGCCCCGCAGATC
3' ss Score
8.72
Exon sequences
Seq C1 exon
CGGAGGAGCCGCAGGAGACGGATCTGCTGCGTGGAGCGGCCGGGGGCAGCCGGTGCGTGCGGGGCTGGGCGCTCACCCGGCAGCAGCTCCGCGCTCTCTTCACCAAACGACTGCTCCATGCCCGGCGCAGCACGCGGGGCTTCTTCGCCCAG
Seq A exon
GTACGGCCGTGGGGGGGACCCTGGGATGGGGGCAGAGGCTGCGGAGCGAGCCCTGACCCGCGGCCCCGCAG
Seq C2 exon
ATCGTCCTGCCCGCTGCCTTCGTCTGCCTTGCGCTGCTCTTCAGCCTCATCGTGCCGCCCGTCGGGAAGTACCCAGCGCTGCGCCTGGAGCACGGGATGTACGGGCATCAGTTCACCTTCTTCAGGTGCGCGCACGGTCCCCGAGTGCTCTGCCCACCCCGGAGCCGCTGTCCCACGCGTGTGCCCTTTTGCAGCAATGACGCTCCGGGGGACGCGGACACGTCCCGGTTGTTGGCCGCCCTCCTGGCCGAGCCGGGCTTCGGCACCGCCTGCATGAAGGACGCGGCGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAACGACTGCTCCATG
R:
GAACTGATGCCCGTACATCCC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]