RnoINT0010369 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12749961-12750435:-
Coord C1 exon
chr7:12750284-12750435
Coord A exon
chr7:12750086-12750283
Coord C2 exon
chr7:12749961-12750085
Length
198 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CTGACAAAGTTGTCCCACAGATC
3' ss Score
4.82
Exon sequences
Seq C1 exon
CTAAGCTGGTGCTGGACCCCCAAGCCCCAAAAGGCTCTGCACCCACCACTGCCCAAGTGCAAGGCTGGACACTCACCTGCCAACAGCTCCGGGCTTTGCTCCACAAGCGTTTTCTGCTCGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
Seq A exon
GTGACAATGCCCCACACTGAGGAGGATGGGTGACTGTCCTAGGGTGTCTGCCCATGCTGGCTGTCATCAGTGACATCATTCCACAGTAACCCATTTCCCGCTGTTTGTAGAGGGTGCTGGGGAGCCATGGAAGGTGGTAGAGCAGGCGGGGGCGGGGCAGCGTGTATGGAGGTGGATGCTGACAAAGTTGTCCCACAG
Seq C2 exon
ATCGTGCTGCCCGCCCTCTTTGTGGGCCTGGCCCTGTTTTTCACCCTCATCGTGCCTCCCTTTGGCCAGTACCCACCCCTGCAGCTCAGCCCTGCTATGTATGGCCCTCAGGTCTCCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGGCTCTGCACCCACC
R:
AAGGAGACCTGAGGGCCATAC
Band lengths:
244-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]