GgaINT0145536 @ galGal3
Intron Retention
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:274957-279006:+
Coord C1 exon
chr28:274957-275052
Coord A exon
chr28:275053-278910
Coord C2 exon
chr28:278911-279006
Length
3858 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CCATTTCTATTTCTAAACAGCTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
TCCAAACCTGCAATGTCAGATGCATGAATGGAGGAAGCTGCAATGAGGAATCTTGCCTCTGCCAGAAAGGTTACACTGGAACGTACTGTGGGCAGC
Seq A exon
GTAAGTACTTGCAACACCAGCTATGTGTATGCACAGTGAGCAGAAGGGCAAGGCTAGATTTGTAGAGCCTCATAAATAGAGGTCACCTTGCATGCTCTGATGTGCTGGTTGCAGCGCAGACTTTGGAGTCCTCGCTGTGTTCTGCTCTCCATTGGAATCTCAGCTCACTCTCACTGGGACGTAGGTTACATTTGTTTAGGTTACATTTGGCGTGGCTGGGAGAAGAGTCAACGCTGACACTCTGCAGCCATCCTTCTGGTTCCCCACAGCTGTAGATCCAAACTGCTCTGCAGTGTGCACATCTATCCAGCACTGCCCATCGCGCACCGCTGACCTCAAAGTCATGACCTGCCTTGACTTGCACTGTGCTCCTCGGACATGAGTTTGAGGGAGCTCATATCAAAGATGTGGCCTTTGAGTGCACATCTCTTGGCTCTCAGCCTGAGTGCCCCATGCTAGGAAGGGCAGGTGCAGCCTTTGCTGATTGTCCCCTGTTCTACAGTGGACCACGGTAGCTGGAGTTCCATATTATTTCTCTGTATATATTTTTAGAAAATATTTTTAGAAAAACAGCATATTCTCTGGGAATGGTCTTCTTGTGGGAAACCTTCATTTTAGCTCAAATGAAGTCTGCTTTCAATTAGAAGATGAAAAACTTTTTAAAGAATGGCAAAAAAAAATTGTTATAAACTATACTTATTACATTTTGGGGACCTAAATTTTTAGTTGTGCTTATATGACAGTGCTGACTTTCTATAAGGAAACCCCAATTTGGTCACCAAAAGAAACTTCACAATGATTTATAACTTGATCTTGTATTTTGTCAAAGCACCTCTACTTTTCATAGGGAAAAACTGCACCTTTTTTCCCCAGTGCCCTATGAAAGGATTTGGCAATTAAACGATTGCTTGTGCATATAGTAGAACAATCAAAGAACTTATGTGCTGTCTGTAGTAAGCAGCTACCAAGCAAGTATGCAGAAGGATATTAAAAGAATCTCTGATCAAATGGAATTTTACAGGCAAATTTCAAATCCCTGTATGAATGTGAGAACTGCTGAGGTTCTATGAGAATTTTCTTTAAGATGGGCAAAAGACTATATTTTCCCTAAGCTTATCCTCAGCTACAACTGATTCATTTCTGCTGGAACTTTCCAAAAAGTTCAACTGAAGACAGACACACCATATGGAAAGTTTCATTCTGAACAGTTAAAGCTTGGGAAAATTGTAAGTAACAGCAAACCAGAGCTTATACTGGAGCATGCTAAGCAACCTTTATTAAGTGCTGCTACCAGCTCCACCTATAATATCCTCAGTAGAGTTTTCATAACGGTTCAGATATTGGCAGCACATCACTGGCAGGGTGGGATCCCACTGGCAGCATTCCAGCCAAGCAGATTTCAGCTTCCTCAGCTCTGGAATGGGTTGTAACCTTTGAAGGCTGTGATATGCAGCAGCACCTGGCCTCTGTAGCCTGGCACTTGGCACTAAGCTAGTGATGGCAATGCTCAGGTGCTGTACAAGATTGCTGTGGATCTCCCTTTTCAGGTGAGATTATGTGTTGTCTTCAGTGTGCCAGTGAACTAGGCAACTGACTAGCTCAAACGGTGAAAATTTGTGTAGGAATTTTAGGAAATGCCTTAACAGCCCTAATTAGTCCCAACAAGTGCTGAGATTTTAATAGCTCCATGGCATCCTGCCCCTCTCAGCCTCTCATTGGCACTCTCTGCAGCACTTGATCTTGTGCTGCAGATGGCTGCTGACTTCCGTCTTGTATTCACACACAAGAGAATGCCAGCTAGTGTGGGTGTACTGAAGAAGATAGGTCTGAGGAAGCCAGGTGTTTCCATTTTGGGAGCTGGTGATACCACACACTTGCTACAGCAGAATTTGGATTGCTCACAGAAGAAACCAAATTTCTCTTCCTGACTTTTCTCAGGCTTGTGTTCCTTTACTCACTGCTCACAGAGGGGCTTCCCACTCCCATTCTGATCACAGAATCTGCCAGAGAGTCTGATGGAACAAGGATGGTTACGTTAGACTTGGGCTGCCAGGATCTACAATCCTCTTCCTCCACCTGCCTTTGGCTTTCAGGCCAATGCTGTAGCCTGAGCAATGGTGACCTCAAAGGCACAGAAGTGGCCCCTTACTGCCTGAGGTTGTTGAGAAGAAACTTCTGTAGGAACACACCACATGACAAAAAATGAAAGCACAGCCTGTCCATGGTACCATAAGAGGATTTCTGGTGCAGATAGACTCTGGAGAAGATACAGCCCCTGATTATTTTTTTTTTTACCAGCCCAAGGAAAGGATTTCTCTGTAGGAGGGATGAGCCCCTCTCCCCTCACAATGGCTCTCACAAGGGTCCCAGCTCCATCTAGTTTGCAGTCTCTGGGGAGGAAAGATGGCACAGAGACCCTTTGGATCCATGATCCTTCACAGGAGTTTTGCTGCACCATTAGTGTATCAGAGGCAACTGTATAGCTGCTTTGAAATAGCAAGACTTGAAAACATTCATTTTCAAATCAGTTGAGAGCGTTTCACTTATAGAGAAGTTCCTACCAGCTGGGCTTTAACATGTCTCTGTCAGTTCTCTCTGAAAGGTTATTTCTCTTCTGCAGAGTGTCATCTCTTGATATCACTGCCAGCCTGGACGAACTCATCCTACCGCAGTGTTAGGAAATGATGAGTTGATGCCAGTGCCTCCTAGAATGGGCACTGACACTGTGCCAGAATGTTTGATCCATCCATTCAGGTGTTCCTCTACTTGCCAGGGAAATCAAAACCATTGGGTCCTCCTGACACGTATGCTGGTGCAGTCAGAACAACAGGTTTGATTTGTGGTCCTGCAGGGTGAGCAACCACAGCTCACATGGCATACCTGACTGCCACTTGTTTCTTGACCCTGCTTTCCACCACCACTTTAATTTTCTGCCTCAGTCTCCTTGTAGATAAACCTGTCTCCAATAAACTTTGTCTTATTTGTCCCAGTTTTGTTTCTTCCTTACCCAAATTTGCTATTTCTGATATTATTATTGATGCAATCTCAGCCTTGCATGCAATTACCAATACCGTTACCCGAATACTGCTGGCCTTGTAAGACCTCTAAGACTTCCTCAGAAGTCCCCAGTCAGTTATTTACAAGGTTTGGCAATTTCCCACAGTTCCACCTCACCTCCCAGTAAAACCCAGACAATGCTTGCAGCACAACCTGTAACTTTCTTCATCAGCTCACATTCTTACTTGTCACTACCAGCAACTGCTCACATCATGCAGGTTTTTCAGCTAGTAAAGCCTAATCAGTGACATAAGTGTTCTGCCTTTACTTCCATCATGTTGACAGCAGATTTTCAACTAAGAATAGCAGGGCTAATCTGAAGTCAAGGAATGTTTGCTGCCATATCACACTGGCCTCTAGTTCTTCCTTGCTTCAGATGCGTGGGATGAAATGGCTGACTGGTCTCTTCTCACATTTTATGGTCTTCCTGTTCTCCTCTCCTTAGATTTAAACTGCCTTTATGCAGTTTCTCATTTGTATAAATTCATCTTGACCTTTACATTTAAATCCCAGTGCTGACCCGAATGAGCTGAGATTCCAGAGCACAGGAAATCCTCTCAAGTGAAATGGGAGTTTATAGCCTTTTTATAAATGGTTTCACTCATAAACAGGAAATCATTTTCAAGGGGAAAGAAAAAAAAAGATCACACTTTTCTCTATATGTTCAGTACATGGAAGAGATTCTTGATTGGTGAATAACACAAAGTAGGTGGCATCCTGAGTTCTTCTAGCACTACACAGCTCACGCTGTCATTTCCCTGAGAGCAGAAATCACTGATTTCCATTTCTATTTCTAAACAG
Seq C2 exon
CTGTCTGTGAAAATAGCTGTCAGAATGGAGGTCGCTGCATTGGACCAAACCGTTGTGCATGTGTATATGGATTTACCGGCCCCCAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]