GgaINT0145536 @ galGal4
Intron Retention
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:303207-307255:+
Coord C1 exon
chr28:303207-303302
Coord A exon
chr28:303303-307159
Coord C2 exon
chr28:307160-307255
Length
3857 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CCATTTCTATTTCTAAACAGCTG
3' ss Score
9.05
Exon sequences
Seq C1 exon
TCCAAACCTGCAATGTCAGATGCATGAATGGAGGAAGCTGCAATGAGGAATCTTGCCTCTGCCAGAAAGGTTACACTGGAACGTACTGTGGGCAGC
Seq A exon
GTAAGTACTTGCAACACCAGCTATGTGTATGCACAGTGAGCAGAAGGGCAAGGCTAGATTTGTAGAGCCTCATAAATAGAGGTCACCTTGCATGCTCTGATGTGCTGGTTGCAGCGCAGACTTTGGAGTCCTCGCTGTGTTCTGCTCTCCATTGGAATCTCAGCTCACTCTCACTGGGACGTAGGTTACATTTGTTTAGGTTACATTTGGCGTGGCTGGGAGAAGAGTCAACGCTGACACTCTGCAGCCATCCTTCTGGTTCCCCACAGCTGTAGATCCAACTGCTCTGCAGTGTGCACATCTATCCAGCACTGCCCATCGCGCACCGCTGACCTCAAAGTCATGACCTGCCTTGACTTGCACTGTGCTCCTCGGACATGAGTTTGAGGGAGCTCATATCAAAGATGTGGCCTTTGAGTGCACATCTCTTGGCTCTCAGCCTGAGTGCCCCATGCTAGGAAGGGCAGGTGCAGCCTTTGCTGATTGTCCCCTGTTCTACAGTGGACCACGGTAGCTGGAGTTCCATATTATTTCTCTGTATATATTTTTAGAAAATATTTTTAGAAAAACAGCATATTCTCTGGGAATGGTCTTCTTGTGGGAAACCTTCATTTTAGCTCAAATGAAGTCTGCTTTCAATTAGAAGATGAAAAACTTTTTAAAGAATGGCAAAAAAAAATTGTTATAAACTATACTTATTACATTTTGGGGACCTAAATTTTTAGTTGTGCTTATATGACAGTGCTGACTTTCTATAAGGAAACCCCAATTTGGTCACCAAAAGAAACTTCACAATGATTTATAACTTGATCTTGTATTTTGTCAAAGCACCTCTACTTTTCATAGGGAAAAACTGCACCTTTTTTCCCCAGTGCCCTATGAAAGGATTTGGCAATTAAACGATTGCTTGTGCATATAGTAGAACAATCAAAGAACTTATGTGCTGTCTGTAGTAAGCAGCTACCAAGCAAGTATGCAGAAGGATATTAAAAGAATCTCTGATCAAATGGAATTTTACAGGCAAATTTCAAATCCCTGTATGAATGTGAGAACTGCTGAGGTTCTATGAGAATTTTCTTTAAGATGGGCAAAAGACTATATTTTCCCTAAGCTTATCCTCAGCTACAACTGATTCATTTCTGCTGGAACTTTCCAAAAAGTTCAACTGAAGACAGACACACCATATGGAAAGTTTCATTCTGAACAGTTAAAGCTTGGGAAAATTGTAAGTAACAGCAAACCAGAGCTTATACTGGAGCATGCTAAGCAACCTTTATTAAGTGCTGCTACCAGCTCCACCTATAATATCCTCAGTAGAGTTTTCATAACGGTTCAGATATTGGCAGCACATCACTGGCAGGGTGGGATCCCACTGGCAGCATTCCAGCCAAGCAGATTTCAGCTTCCTCAGCTCTGGAATGGGTTGTAACCTTTGAAGGCTGTGATATGCAGCAGCACCTGGCCTCTGTAGCCTGGCACTTGGCACTAAGCTAGTGATGGCAATGCTCAGGTGCTGTACAAGATTGCTGTGGATCTCCCTTTTCAGGTGAGATTATGTGTTGTCTTCAGTGTGCCAGTGAACTAGGCAACTGACTAGCTCAAACGGTGAAAATTTGTGTAGGAATTTTAGGAAATGCCTTAACAGCCCTAATTAGTCCCAACAAGTGCTGAGATTTTAATAGCTCCATGGCATCCTGCCCCTCTCAGCCTCTCATTGGCACTCTCTGCAGCACTTGATCTTGTGCTGCAGATGGCTGCTGACTTCCGTCTTGTATTCACACACAAGAGAATGCCAGCTAGTGTGGGTGTACTGAAGAAGATAGGTCTGAGGAAGCCAGGTGTTTCCATTTTGGGAGCTGGTGATACCACACACTTGCTACAGCAGAATTTGGATTGCTCACAGAAGAAACCAAATTTCTCTTCCTGACTTTTCTCAGGCTTGTGTTCCTTTACTCACTGCTCACAGAGGGGCTTCCCACTCCCATTCTGATCACAGAATCTGCCAGAGAGTCTGATGGAACAAGGATGGTTACGTTAGACTTGGGCTGCCAGGATCTACAATCCTCTTCCTCCACCTGCCTTTGGCTTTCAGGCCAATGCTGTAGCCTGAGCAATGGTGACCTCAAAGGCACAGAAGTGGCCCCTTACTGCCTGAGGTTGTTGAGAAGAAACTTCTGTAGGAACACACCACATGACAAAAAATGAAAGCACAGCCTGTCCATGGTACCATAAGAGGATTTCTGGTGCAGATAGACTCTGGAGAAGATACAGCCCCTGATTATTTTTTTTTTTACCAGCCCAAGGAAAGGATTTCTCTGTAGGAGGGATGAGCCCCTCTCCCCTCACAATGGCTCTCACAAGGGTCCCAGCTCCATCTAGTTTGCAGTCTCTGGGGAGGAAAGATGGCACAGAGACCCTTTGGATCCATGATCCTTCACAGGAGTTTTGCTGCACCATTAGTGTATCAGAGGCAACTGTATAGCTGCTTTGAAATAGCAAGACTTGAAAACATTCATTTTCAAATCAGTTGAGAGCGTTTCACTTATAGAGAAGTTCCTACCAGCTGGGCTTTAACATGTCTCTGTCAGTTCTCTCTGAAAGGTTATTTCTCTTCTGCAGAGTGTCATCTCTTGATATCACTGCCAGCCTGGACGAACTCATCCTACCGCAGTGTTAGGAAATGATGAGTTGATGCCAGTGCCTCCTAGAATGGGCACTGACACTGTGCCAGAATGTTTGATCCATCCATTCAGGTGTTCCTCTACTTGCCAGGGAAATCAAAACCATTGGGTCCTCCTGACACGTATGCTGGTGCAGTCAGAACAACAGGTTTGATTTGTGGTCCTGCAGGGTGAGCAACCACAGCTCACATGGCATACCTGACTGCCACTTGTTTCTTGACCCTGCTTTCCACCACCACTTTAATTTTCTGCCTCAGTCTCCTTGTAGATAAACCTGTCTCCAATAAACTTTGTCTTATTTGTCCCAGTTTTGTTTCTTCCTTACCCAAATTTGCTATTTCTGATATTATTATTGATGCAATCTCAGCCTTGCATGCAATTACCAATACCGTTACCCGAATACTGCTGGCCTTGTAAGACCTCTAAGACTTCCTCAGAAGTCCCCAGTCAGTTATTTACAAGGTTTGGCAATTTCCCACAGTTCCACCTCACCTCCCAGTAAAACCCAGACAATGCTTGCAGCACAACCTGTAACTTTCTTCATCAGCTCACATTCTTACTTGTCACTACCAGCAACTGCTCACATCATGCAGGTTTTTCAGCTAGTAAAGCCTAATCAGTGACATAAGTGTTCTGCCTTTACTTCCATCATGTTGACAGCAGATTTTCAACTAAGAATAGCAGGGCTAATCTGAAGTCAAGGAATGTTTGCTGCCATATCACACTGGCCTCTAGTTCTTCCTTGCTTCAGATGCGTGGGATGAAATGGCTGACTGGTCTCTTCTCACATTTTATGGTCTTCCTGTTCTCCTCTCCTTAGATTTAAACTGCCTTTATGCAGTTTCTCATTTGTATAAATTCATCTTGACCTTTACATTTAAATCCCAGTGCTGACCCGAATGAGCTGAGATTCCAGAGCACAGGAAATCCTCTCAAGTGAAATGGGAGTTTATAGCCTTTTTATAAATGGTTTCACTCATAAACAGGAAATCATTTTCAAGGGGAAAGAAAAAAAAAGATCACACTTTTCTCTATATGTTCAGTACATGGAAGAGATTCTTGATTGGTGAATAACACAAAGTAGGTGGCATCCTGAGTTCTTCTAGCACTACACAGCTCACGCTGTCATTTCCCTGAGAGCAGAAATCACTGATTTCCATTTCTATTTCTAAACAG
Seq C2 exon
CTGTCTGTGAAAATAGCTGTCAGAATGGAGGTCGCTGCATTGGACCAAACCGTTGTGCATGTGTATATGGATTTACCGGCCCCCAGTGTGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]