GgaINT1000171 @ galGal4
Intron Retention
Description
Sulfotransferase [Source:UniProtKB/TrEMBL;Acc:E1C5F3]
Coordinates
chr11:19363500-19369931:+
Coord C1 exon
chr11:19363500-19363598
Coord A exon
chr11:19363599-19368403
Coord C2 exon
chr11:19368404-19369931
Length
4805 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
GCTTTCCTTCTCTTTTTCAGCTT
3' ss Score
11
Exon sequences
Seq C1 exon
GCTCCTCCCGCTGCCGTGGCACCTCGGCCACGTCTGAAAGCGGCTCATTGTCTCCGCAGGGAGCTCGGATCCGCATCAGTGCCGGAAGGCGGCGGGGAG
Seq A exon
GTACGTCCCACTGGACGGGGATCCCAGGGGGATTTCTGTTGGGTCCGTTGGCGAAGACTGGCCTCTTTTTCGTTATCCGGCGGCACGTCCCTCCTGAGCAACCCGGCGGTGGGTTTTAAGGCGGCTCGTGCTGGTGAACCAGCTGTACTGCCTGAGGCCGGGCCTGGCCTTGTTCCCGCCTCCGGCGCGGTGCTGGTGCCGGCGGTGCTGTGGCGATGGTGGTTTTTGTTGTTGTTGTTGTTTTTTTTTAAATCCCACTGGAGAACGTGGCTGTTTGAACGGAGGCGTTTTCGCTCGCTGGAATTAGACGGTGAAATCAGGTTCTGTAGAGCGCGTTTTCCGTCATTTTAGCAGGTCCCTTCCCATTTTTCTAACGTGTCCAGCCTCTGTTTCTTGGTGAAAATAACAGAGTCAAATAATTTGTCATGTTTTTCTTAGTTTTAGTGGCGCTTTCATGCGCGCAGTGCAGCTCAGCCTGCACGTCCTCAGGCTGACTTTTAGGACGCTGTTGTTAACAGCGTTGGCAAAGTCTGAACGAGGAGAATGGCACTTGGTCACCACAAGTGTCTGTGATCCCAGTGTTTTTAATCAATTCACTACTGAGTTAGGGTTCAGCTAAGAGCTACTTGTATATCCACTTATGTGTGCTATGAAAGGGAAAAATAGATATGATGTATAGGGAATGTAACTCTAACTTATCCTTTTCTTTCCCACATTTCTGACTGCTCTGGTGTTTTCTCCATTTCCACCCTTTTTATTTATTTATTTATTTACTGCATTTAAAAAACCTGCTCTAATATGACTGGTGCTGCCCCAGGGAAGTGCTGCTGTGAAGCAAAGAAGGGAGAAAAGAAGCAGGAGCAAGCTGCTTTTGCTTTCCCAAGGGGAATGTGGGTTAGGCAGGTTGCGATGCTGAGCTGCAGGTGGAGGGAGGGAGGGCAGACAAATAGAGAGGCAGCACAGAACAAGGTACAGACCAGTTTTTCACTTAGTAACTAACGATGTTTAAGCATGTTCTTTCCATGTTTAAAGGAAGAGCTTGCCTAGCAGCACCCTCTGGTGAGTCCTGGAGGGAAATAAACAGGATCAGAAGGAGCACCCTGTAGTACAAGCTCCTGTCCCTTGTGATTAAGGCTATAATATCATGTAATCTGCTTAGTAGGCTTATAAATATTCAAAGTGTTATGGGAGGGTGATTCTTCAACATATTGAACAGCTTTTTGCATTTGTGAAAAGTTATGAAAGATCTTGTGTGTTACGAAGGAGTACATTAGAGCAGTGTAAGTTTAATACAGTTTTAAAGAACAGTAAAACTGGAGAATGCTATTGCAAATATAAAAGGATATTTATATGCAAATAGAATTATGTGTGCTTAGTTTGAGAAACTTTGAAATAAAAGGCAGTGTTATTGAGAAATTTTTGAGCTGAATGTATATGTGGTCTCATGCACTGAAACAGCCTGGACAATATTCTCATAGATGCTGCATTTTGTTGTGTAATTATTCATTTATTTTTGCAGTCTGCATGTGTGCACATTGCTCAGAAACTTCCCAACTTTTCCAAAAGGGTAGAAGATGAATCTGAAACACTGAAAACGTGTATTTACTCAGTGCTTTACTTGTATATCAGACTTCCATGTTGTTGCATTTAGTAGCAAAATTGTGTTCATTTACAATAGTGTTTAGATCCTGATGAGACATTCTATGATGTCATCACTAGCTGAGTAAATGTGGGGAGAGCAGTGGGTGTTGTGTGCCTTGACTTTAGCAAAGCATTTTACACTGTCTCCCACCACATCCGTGTTATGAAACTTAGAAAGTGTGGGATAGATGAGTAGACAGTGAGGTGGATTGATAACTGGCTGACTGGCAGAGCTCAGAGGGTTGTCATCAGTGGCACCAAGTCTGGTTGGAGGCCTGTAAATAGTGGTGTTCCCCAGGGTTGGTGCTGGGTCCCATCAAGTTCAACATCTTCATCAGTAACCTGGATGAAGGGATAGAGCCCACCCTCAGCAAGTTTGCTGATGATACAAAGCTGGGAGGAAGGTTGTCTTACCATTCAGTGAGACCTGATCAGACAGGAGAGTTGGGCAATGAAGAACCTGATGAGGTTCAGCAGGAGCAAGTGTGGAATCTGGCACCTGGGGAGGAATAACTGCATGCACTGGTACAGATTAGGTGATGACCTGATGGAGAAGGACCTGAGGGTCTTGGTGGGCAACAGGCTGGCCACAAGCCAGCAGTGTGCCCTTGTAGTCAAGAAGGCCAGTGTTATCCTGGGGTGCATTAAAGAGAGTGTGGCCAGCAGGTCGAGGGAGGTGATCCTCCTCTACACTGCCCTGGTGAGGCCACATTAAGAATACTGTGTCCAGTTCTGGGCTCCCCAGGTCAAAAAAGACAGATGTCCTAAAAGGAGTCCAGCGGGGGGCCACAAAGATGATAAGGGCCTGGAGCATCACCCATATGAGGAAAGGGCGAGTATCCTGGGTCTGTTCAGCCTGTGGAAAAGAAGACACAAAGGGGATCTGATTAAACATTTAAATCTCTAAAGGGAGGTGGGAGGCAAATAGATGAGGCTGGGCTCTTCTCAGTGGTGCATACTGATAGGACAAGGAGTAATGGCCTAAAATTGAACATAGGAAGTTCTGTACTAACGTGCAAAAGAACTTCTTTACGGAAACAGTGACGGAGCACTGGAACAGTTGCCCAGAAAGGCTGTGAAGTCTCCTATGTAGATATTCAAGACCCGTCTGAACACCTACCTGTGCAACTCATTGTAGGTAACCTGCTTTAGCAGGGGGGTTGGACTCGATGATCTCTTGAGGTCCCTTCCACCCCCTGTGATTCTGTGATTTGTCACAATAGAAAGAGCTGATAACTGCCCATTTCTACCATCTCTTTCACTTAACCTTTCATTTCAGCTTTCTCTACTAGTAAATAGTCTTTGTTTAGTATTTTGTAACACTAGCACAAAAAACTCCATTTATTATGTCAAATAGGTTTATATTTGTATTTACTAGTCTGCATGATTTGCTTTCAACAGAGTTCAGAGAGTGTTGATATAGCTACCTGTTGCTGCAATAAGAAAAACTAGGTGCAGTTGAATAGTAAATGCTTATATATAAAACACTCAGTATGATTTTCACACATAAGGATCTTATTTCCTTTAAATTCAGCCTGCTAACATACAGTCACAGAATGGTTTGTGTTGGAAGGGATCTTTCAGATCATCTAGTTCCAACCCTCTGCTATAGGCAGGGACACCTTCCTCTAGACCAGGTTGCTCACAGCCCCATCCAGCCTGGCCTTGAATGCTTCCAGGGAGGGGGCATCCGCAACCTCACTGGGCAACTTGTTCCAGTATCTCACCACTTTCAGTTAAGATTTTCTTCCCAGTATCTAGTCTAAGTCTTCCTTCTTCCAGTTTAAAACCATTTCCCCTCATCCTGTCACTACCTGCCCTGATTAAAAAGTCCCTCCTCAGCTTTTCTGTAGGCCCCTTCAGGTACTGGAAGTCTGCTATAAGGTCTCCTCAGAGCCTTCTCTTTCCTGGGCTGACGAGCCCCACCTCTCTCAGCCTGTCCTCATAAGGGACCAGCCCTCTGGTCATCTTTGTGGTCCTCTGGACCCGCTCCAACAGCTCCATATCCTTCTTGTGTTGGAGGCTTCAGAACTGGATGCAGTACTCCAGGCGGGGTCTCACAAGAGCAGAATCACCTCCCTCAACCTGCTGGTCACACTTCTCTCGATGCAACCCAGGACATAGTTGGCCTTCTGGACTGCAGGCACACACTGCCAGCTCACACTGAGCCTCTCATCAAGCAACACCCCTAAATCCCTCTCCTCAGAGCTGCTCTTCAGCCATCTTCTCTGCCCAACCTGTACCTGTGCTTGAAAGTGCCCCAACCCAGATGCAGGACCTTGCACTTTGCCTTGTTGAGCTTCACAGGGTTGGCATAGGCCCCCCCTCTCAAACCCATCCAGGTCCCTCTGGATGGCAGTCCTTCCCTCTAGCTGTACCACTCAGATTGGTTTTGTCTGCATACTGTCTGCTTTCAAGTGAAATCTGCAAAAGTAAGAGCATAAAGGGTTAGGTGCCAAAAATCTCTAGTAGAAAGTTGTGAGAAATGATTAATGCATAAATGGGTAGTCCTTAAATACCATCTCTCTGTAATCACAGATTGGGCACTGTAGCCCAAGTACATGCATCAACTCCTTGTTCCATATAACACTTATGGCCAGAAGCTGCTTCAAATTGCAAGTTTTCACCCTTCTGTAGTTTTGAAAAATTGAGAGTTGTGCTTGACCATCAGCTGGTGCAGCATCCTTCTGTCACCACAGGGTGCATTGCTCAGTCATTGATAAGGTAATTTTGATTTCAGTAGCCACAATTGTTAATGTTGCCACTTACTCCTTTCAAAGGATAGAAACCCTTGTAATTTTAGACCAAGACTGAAATGCAGTGGAGTGATTAGGTTTTTTTTCCCTTGGCAGCATTTGGCAGATTCCAAGTAGAGAGCATTTTGTATTTTGAGCAGTTGAGCAGCATCAATATTTCTTTCAGCATCAAGCCTTTGCTCCAAGTTTATTTTTACTGTGATCTTGCTGTAGTGCATTTATTTACTTCTGTTTCCAACACCTGTCCATCTGCAGATGTTCTCCTCCCAGTACCGCTGATTAAGGAACCAAGCAGTACCGAATACACATGTATTTAAAGATCTTACTAATGCTAGAGTTTGTATTGTGTGTTATTGTTATTATGCCATAGCATCAACTGTTCACTATTGCTTTCCTTCTCTTTTTCAG
Seq C2 exon
CTTTTTTAATTGCCTGGTGAGAATGGCAAGGATTCGGATTTCTAGCACAATCATTACGCTTCTTGTTATGGTCCAGACTGGATTCCTACTCTTCATGTATGCCCGGTACAATAGCTTCACACCTCATTCAGAGGAGAAATCATCTCAAGTCCACATTCTCATCCTCTCCTCCTGGAGATCGGGATCTTCTTTTGTTGGCCAGCTTTTCAGCCAGCACCCCAGTGTCTTCTACCTGATGGAGCCTGCATGGCATGTGTGGGTTACAATGTACCAGAACAGTGCCAAAGTCTTGCACATGGCGGTGCGGGACCTGGTCAGGTCTGTCTTTCTCTGTGACATGTCTGTTTTTGATGCCTACATGCCTTGGAAAAGAAACTTATCTGATCTTTTCCAGTGGGCAGTGAGTCGGGCTCTCTGTTCAGCTCCTGCTTGTGACTCCTTTCAGCGTACTGATGTTACCAGTGAAATGGCATGCAAAACTCTTTGTGGACGGTACCCATTCAGCAAGGTGGAAGAAGCCTGTAAAACTTACAGCCACGTTGTAATCAAGGAGGTTCGCTTTTTTGACTTGAAGGTCCTCTACCCACTTCTCACGGATCCATCCCTGAACCTCAAAATAATTCACTTGGTCCGTGACCCCAGGGCAGTTGTAAAGTCACGAGAACAATCAGTCAAAGCATTAGCCCGTGACAATGGAATTGTTCTGAGTACCAATGGCACTAAAGTGGAAGACAGCAAATACAAAGTAATGCAAGAGATTTGTAGAAGTCATGTTCAGATTTATGAAACAGCAACTCTAAAACCACCTAGCTTCCTTAAAGATCGCTATCTAATGATCCGTTTTGAAGATCTGGTAAGAGACCCATTGTCAGAAATCTCAGAAATGTATAAATTTGCAGATCTTAGTTTGACCCCCACACTCAAAAGCTGGGTCTACAACATCACACATGGACAGGGACCAGGAAAAAAAAAAGAAGCCTTCAAAATCACGTCTCGAGATGCAGTTAATGTTTCCCAGGCCTGGAGAAATGTTCTTTCATTCCAGAAAATTAAAAAAATACAGGAAGTTTGCAAAGGCGCTATAAACATGCTGGGCTATCAGCTAGTGGATTCAGAAAAAGAACAAAGAGATCTGTCACTGGATTTAGTGTTGCCAAGAAGACAAAACCAATTCAGTTGGTCATCATTTAATCCAAAGAACTAAGCCATTACTTTGGGAGATTAGGGAGGCGAAGAAGGAAGAGAGTATCTATCTGTTGTGCAGTGTATAGGTAGTTTAAAAATCCTTGGCTAATGAGTTTAATTATCTTCCTGCCTTCTGGTTCACAAAGTAATGTAAGCTTTTTTTTTTCTTCTTTTCCCGAGCTTCTTACACCACAAAACAAACAAACAAACAAAAAAAAATAGTGAAAAACTCAGCAAGATACTTGTGAGATTGCAAAATTGCAGCTGAAACGTGCTGTTTTGAGCGTTGTTTTTAAAATATAATTTAAATTTTTTCAATAAAAGACATCTTTGTTCATTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000913:ENSGALT00000001342:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0068522=Sulfotransfer_1=WD(100=82.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]