GgaINT1000227 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NUF4]
Coordinates
chr18:2149742-2151143:+
Coord C1 exon
chr18:2149742-2150774
Coord A exon
chr18:2150775-2150984
Coord C2 exon
chr18:2150985-2151143
Length
210 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CACGCTCCTCCCTCTCACAGGCA
3' ss Score
11.69
Exon sequences
Seq C1 exon
TGGTGCTCAGCTCCTCTCCCATCACCGTTGTGGTCACACCGGAGGATGACACGTGGCACATCAGTGGCTCCTGCACGGCCGGTGGGCCGTTCATGGACTGGGACCAGACGGCAGAGGTGGAGCAGCAGGCAGATCCGCCCGAGGACACGCTCAGCCGGCCCCCCAAGGAGCTGAAGAAGCTGGCAAGGGAGGGCTGCTGGGCCGCCAGCCGCACGCTGAGGGCTGCAGCTTACCAGCGGCTGTGCCAGCGTGTCGCCTGCCGCCTCGTCACACCCGATGCCCTGGTGTATGGGGATGTGGCCACGAGGCTCTTTGGAAAGCACGGCGCCAGCTCCCACCCGCTGCCCGACTTCCTTGGGGGGTGCTCCCTGCCCACGTACTGCCTCAACCTGCACGGGGTCGCGGCGCTGAAGAAGATCCTCATCTGCATTGGCAACCTGTTCCCTGACATCACCTACAGCCCCGCGCTGCCCTCGCTGGTGGCTCTGCTGCTGCACTACAGTGAGGATGAGGCTCAGTGCTTCGAGAACATCTCCCGCCTCATCGCCAGCAATGCCCCTCACACCAGCTACATCGACCAGTCCTTCCTGGCCCACCAGGCCTCCTGCATGACGTTCGGGGACCTGGCCAACAAGCACTGCCCAGCGGCGCACAAGCTGATAGCCAGCACGTCTGAGAACGTCTTTGAGGTGTACTCCGAGTGGCTGTGGTGGCTCTTCCGCGACCTCCCCTTCAGCTACGCCATCCGTGTGTTTGACGTCTTCCTGCTGGAGGGGCAGAAGGTGCTGTACCGCATCGCCCTGGCTCTGCTGAAGCAGTACCGGCTGTCGGTGAGCTCTGCCCAGCAGGAGGGGTCTGACACCAAGGCAGAACTGCAGGCCTTTGTGCAGAACATTGCCCAGCACGTCACTGTTGATAAACTCCTGGAGAGAGCGTTTGGCATCCGGCTGTTCTCCCGCAAGGAAATCTGGCTGCTGCAGATGGCCAACAGGAAGGCACTGATGGAGAGGGGGATCACCATGGTGCAGGGCAG
Seq A exon
GTAGGAAGCTGGCCCGTTTGCCCTCAGTGCCGACAGTGCTCTTGGGGCAAAGTGGGCAGACAATGGGTTCCAGTGGAGATGCAGCACGGGGGGAGCTCCAGTGTGTCCCTAGGCTGTGGCTATGCTGCACAGACACTGTCGGGATCATGGCACATAACAGCACATTAGGGGTACTCCAGCTGAGCGCTGACACGCTCCTCCCTCTCACAG
Seq C2 exon
GCAGTCCTTCCACCTGGCCGTGGACATGCAGAGCTTCAGCTCCAGCATTGTATCAGCTCAGGAGATGCGCATCATCTGGTCCTGGATCCCCGAGCGCTTCTCCCTCTTCCCCCCACTGCTGCTCTTCTCCACCTCAGAAGATGGGTGCAGCCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001244:ENSGALT00000039321:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=WD(100=44.6)
A:
NA
C2:
PF0753411=TLD=PU(14.9=24.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGTGCAGAACATTGCC
R:
CTGCACCCATCTTCTGAGGTG
Band lengths:
305-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]