GgaINT1000863 @ galGal4
Intron Retention
Description
cytochrome P-450 2C45 [Source:RefSeq peptide;Acc:NP_001001752]
Coordinates
chr6:16130149-16132383:+
Coord C1 exon
chr6:16130149-16130290
Coord A exon
chr6:16130291-16130680
Coord C2 exon
chr6:16130681-16132383
Length
390 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GGCTGTGCTTCTCATGACAGAGA
3' ss Score
6.57
Exon sequences
Seq C1 exon
GAAAAAGACAATCCCAAATCACACTTCCACATGACAAACCTGATAACGTCCACCTTCGACTTGTTCATTGCTGGAACGGAGACAACAAGCACCACCACACGATACGGGCTTCTGCTTCTTCTCAAATATCCCAAGATACAAG
Seq A exon
GTACCAGTGTACAGATATTTCCCCTCTAGTGCTCCCCAGGTCATGACACATCTAATACTTTTCTCGTCTCACACTCTACGTCCATGGGCAATGTCCTTGCACCTTCATACCTCCGGGTGCCTGTGCAGTGCACCCAACCTCCATGCCCAGGGACTTGACTGTGTCCACATCTTTCTCTCCCAGTACTCCTATCTAACCAAGTAGTTACAAGCCACTCTTGGAATAGGCTGCAGTGGAGATGCATTCCAGACAACACCAAAATCAACATAAATGTTCCCACCATCACTGATTTCATTCTGAATCCACGGGATTTGAGGACTGCTTAGGACAACCTGCTTGGGTGGGGTTTGTCCTACTGGCCTGTCTTACCGGCTGTGCTTCTCATGACAG
Seq C2 exon
AGAAAGTTCAAGAAGAGATTGACCGGGTAGTAGGACGATCACGAAGACCTTGCGTGGCTGACCGGACCCAGATGCCCTACACAGACGCAGTGGTCCACGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAATGATGCACCTCACTGCAGTGACATTCTGTGCATGTGCTCCCTGAGCACAGCAGTCCCACTGAACAGCTGATTTGCTCACAGCTGTGACTCCATGGCTGTCCATCCCCTGCTTCTAGGGCTGTATGTGTCCCACCCGGAGCAGCACACTTTGCACAGTGACCGTGTTGCGTATGTGTATGCTAATGACCCAATAAAGAGCAATCTATTTAGGAGGACTTGAGCTGTTCCTTTCTTTGGGTTAGGACCGTGCCCGCAGCCACTGTTCGACACAACAGAGTAGGTCAGAATGCATGAGGGCAGCACCCTGCATGCAGGGCTCTCCTCCCCAGGGTGAGGCCTTGCCCGCCTCACCTCTGGACTCACTGCTGCTGCCTGCAACAATCCCTGCCAGTATGCTGCACACAGGGTGCTGACAGAAAGCTGCAGCATCCCTCCTGGAGGACAGCTCTGCCCCCAGTTCAGCGGCTGAAGGAAGCCAGAGCTCCAGTGCTCGTGAGACCTCTGCCTGCTGTTGGGGTCCCCTCTCATTCATTGGACATGCTATGTTACAGCCTTTCCCTAGGGGAGAACAGAGGGAAGTTGCCATCTCCAGGGGTAAGGACAGCAGCCGGAGTTTCTTTCTGCCTTCAGGTTTCTTCCTCACTTACAGTCTAGTCTTTTCCTGTCAAATGAGAACAAGGGTGCCTCATTGTCCTCCCTGGCATCTGTGAGGAGCAAAAGCATCTGAGTGATGGGGACTCCTGCAAACACTCTGGTTGTTCTTCTCTTCCAGCTGTATCACTACCAGGACATACATGTTCTTTATTAAAATGGAGTAAGTTAAACATAAGAGGACAGCAAAGCCACCTCTCCCAGAGAGTTTTCGTACTCTCCTAATGAGGACAGCATCTCCGAGCCTCTCAGAAGCATAACCTCAAAAGGTTCTTTCCCCTCACAATGGCTCTCTGTCCTGTCCTCTGGAACTTCAAAAACACACAAGTATAAAACTCTTATGTTCTTGAAATGCAGCCATGGGACCCCTGGGGTCTGGGAAGTCGACCGTGTCTGTTAATTCTGGTCCCAGCCATCCCTTGGTACTTTTCTTTCAGTAAGAGGGAGGGTGATTTTCATAAACAGATTCCATCACAGTGGGCTCTCTTCTGGCCTTCTTCATCCGTGGGGCCTTTGCTTGTGTTTGGATGCCTGTTCCAAAGTGTTTTCCTTGATCTTCATTTACATAGATATTTGTTGTCTCCTCCATCACATTCAGGTATATATCCTAGAGGCAAAAATATCATTTCTGTGATGGCTGTCACTCAGTACTCAGGCTGCAGAGAAGGGAGAACACTAGAATTTCCACCCCTCTTTGGAACTGTTCGGCAGTATTTTGATGAAAATGCCACATCTGGTCACATTTCTGGTTCATTCATCCTTCTCCCTCCAACTTTTGCTCAAGTAGGATGCAGCTCTGTTACTCATGTACTCTAAAACAATGGCAATCCATCACATGACCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005469:ENSGALT00000008786:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.4=100)
A:
NA
C2:
PF0006717=p450=PD(10.7=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGAGACAACAAGCACCA
R:
CTGTTCAGTGGGACTGCTGTG
Band lengths:
342-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]