GgaINT1002198 @ galGal4

Intron Retention

Gene

ENSGALG00000015097

Description

Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C332]

Coordinates

chrZ:32774467-32776368:+

Coord C1 exon

chrZ:32774467-32774564

Coord A exon

chrZ:32774565-32776241

Coord C2 exon

chrZ:32776242-32776368

Length

1677 bp

Sequences

Splice sites

5' ss Seq

TAAGTATGT

5' ss Score

4.58

3' ss Seq

TGTGACTTCTTCCCTTTTAGGAT

3' ss Score

12.86

Exon sequences

Seq C1 exon

AATTCGAATGCTGAAATCACTAAGCAATCAGCGACCATTAAGTCACTGAAAAACGAGGTCCAGGAAAAAGAAGACCAGGTTCGGGAACTCCAGGCTAA

Seq A exon

GTATGTTCACTGTTTTATCCATTGTGTTTGGTGCCACCCAGCGGCAGCTGTGCAGTCGGTACGGCATTGACTGAGCGTTGGATTCCTCTTAGGATGTCGCGGACTGTTACGGATCTGTGTCTGCATGTCTGTGTTTTTGTGGTTTGTTTTGTTTTTAAGAACTTCGAGAAGTACATGATAAAATTGCATGTTGTTTAAACTGTTATGTGGTAAGCGTCTCTGTGTTGCAATAAGAGTGCCTTAAATCAGAACTCAGACCCTAGAGTGGACTTTTGTTTTTATCCTTGATGTAAGTCTAAATGAATTCCTCAGCACTGTTAAGTACCGTCTTTCAAATACTGTAATTCTTTGCCTAGGGGCTAGGAGACATGTCAAGGTTCACATGCTTAAAGAAGATTAACTATCCAGTCTTACATTCATGAAAGTTCAAAAGGACAGTTGTATTTCTTTCTATTTGAATTGATTAAGGTTTACCACTCGTTTTGAAATTCACATGTATTGGTTTGAAGCATGCATCTGAGATTTTTATTCTGCCCACTTACTTGGACTGATGTAATACAGTTCTTCAGTTATGTTGCTTTATAAATGTTACCTATTAGTGTATCTGTGAATTTCTTCCTGTTGCAAAGTTTAACTCCTCTAGCCATTGCTATATTTTTATATGTAGAAAGAATACAGTTTACTTATCTGATTTTTTATCATTTCAAATATAGAGGACTCTTGAAATGGTTGAATCATGTGTGGTGTATTTTTGGTTTCCAAATAAAACTGATGTCTTCTACCACAGTATTTCAGCTTAACTTTAAATTAGAGTTACCGGTGATCGTGCTTCCTTCATAGAATTGATACTGCTTTTTCATGAACTTCGAGATTTAATCGCCAAAACAACAGTAGCATAAATGTGAAATAGATGGAAGAAATTTTAAGATGTGGTAGTTTCCTGACTTTTCATGTGACACTGACATGGTATCAACAGTATTTTATTCCCGAATAGATTGTCATTTTTGCTTTCATAAAAAGAAATCCAGATGTCTGCATTTCCAGAGCTTGGGTGTTGCTTATGTTTATAGTGAATGTGTGTGACAACTGCAGATGTATTGCATGAGACACGATTTTCTCATTAAACAGAGATCACCTTGTAGTACATGAGAATTTCTTCAGTTGAGAAATTTCTGAAGTGCTGATTTTGTTTCAATCTTTGTCAGATAGTAGAAGTTTTTTTTTCTTGTATTTCTGTTTATTGCTGAGTTGGATGAGAGGAGAATTCCCCCCTTCACTTTCTTTTAAAAAGAATTTTGTACAAAATAAAATAATTTTGTACAAAATAATTTTTGAAAGATATCTCCTTCAAATGTCAGACTTTAATTAATTTAACTTCCTTTCTTTCTTAGTAATATCTTAGAAAGTATTATTATGAGTTGAAATAATGCAAGTTAGAGCATAAACCACATCTAAAAGCAAATCACAAAATAAATGACCCATTTAAAAATCAGTCTATTGATGTGTCTTTATGGTTAAGAGTAAGGTAAGCTAGAAGATCTGAATCTTCTATTCAAAAAAATTGAAAACTATGTAATGATAGTTTCTCTACTGCATTTCCTTTTGTAAATTGTTCAAAACACTTGCATACCAGCAGTATTTTCTAACTAACATGCAGTGTGACTTCTTCCCTTTTAG

Seq C2 exon

GATTTCTCGATTGGAGAGGGACCTTAATATGAAAAGACATTTGATAGAAGACTTTAGGTCTCGTCTAAAAGCAAACCAAGAAAATGAGAAAGCCTGTAACGAAACACTAGAAAGTCTTGAGAGAAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000015097:ENSGALT00000032827:2

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.848 A=NA C2=0.488

Domain overlap (PFAM):

C1:

PF086146=ATG16=FE(35.6=100),PF097304=BicD=FE(13.2=100),PF041569=IncA=FE(19.4=100),PF083176=Spc7=FE(21.5=100),PF123293=TMF_DNA_bd=FE(53.3=100),PF045137=Baculo_PEP_C=FE(23.4=100),PF127182=Tropomyosin_1=FE(21.9=100),PF045827=Reo_sigmaC=PU(17.0=84.8),PF079267=TPR_MLP1_2=PU(19.7=72.7),PF115593=ADIP=PU(14.6=45.5)

A:

NA

C2:

PF086146=ATG16=PD(13.3=27.9),PF097304=BicD=FE(17.4=100),PF041569=IncA=FE(25.5=100),PF083176=Spc7=FE(28.2=100),PF123293=TMF_DNA_bd=PD(20.0=27.9),PF045137=Baculo_PEP_C=FE(30.7=100),PF127182=Tropomyosin_1=FE(28.8=100),PF045827=Reo_sigmaC=FE(25.5=100),PF079267=TPR_MLP1_2=FE(34.4=100),PF115593=ADIP=FE(40.8=100),PF104984=IFT57=PU(26.0=74.4),PF087025=Fib_alpha=PU(17.3=44.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000032190