RnoINT0038327 @ rn6
Intron Retention
Gene
ENSRNOG00000043151 | Cntln
Description
centlein [Source:RGD Symbol;Acc:1308101]
Coordinates
chr5:103329851-103331613:+
Coord C1 exon
chr5:103329851-103329948
Coord A exon
chr5:103329949-103331486
Coord C2 exon
chr5:103331487-103331613
Length
1538 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGC
5' ss Score
3.93
3' ss Seq
TTAAATTCTTCTCCCTTAAGGAT
3' ss Score
8.49
Exon sequences
Seq C1 exon
AATGCAACTAACGAACTCACTAAGCAGTCCTCGAGTGTGAAGTCGCTGAAGCTGGAACTTCTGGCGAAGGATGACCACATGAAGGCGATGCAGGAGAA
Seq A exon
GTAGGCGGCGTGCTTCTATCTGTTGTGTTTGCTGCCACCTAGTGGCCGTCAGCTCTCTTCACCATTCCTCTCTGAGAACAGTACCCGCTTTACCTTTATTTAACAATGGAATTTTTTACTATTTTAAGATCATTTTAAGCCAACATAAGATGGAATTTTCAGCAATACACACATAGCATGATTGATGACAACCAGGTTTCTGTTTTTAATTAGAGTAAAATATTTAACTCCAGTTTTACCTATTAAGCATAATTTGGATAAATATATATTAATGATTTTAAGTCTAAACCAAAACCTACAGTTCTAAGACTAAGAGAACATACAGATTAGTACTTGAATAGGGTTAATTCCTAGTTTTATAAAGCTGAGGTCAAATTTGAAAGTTTTGTTTGCTCATAACGTAACTAGCGGTTCTTTTATATATATTACTTTTAAAGGCGTTTTCATTTCCTTACTATTGAGCAAATATGGTTCTCTTTCTTTGCGCTTTGTAACTGTTAGAGCTTTTATGTGATTATCTGCTTAGATAGAACATGTCATTGATAAATTGCCCATATGACTACCTATAGGCAGTACTAGGAGTGAAACTTAACATACTAATAAATAAAACGTAGACAGAGGATACTGGCAGAATCTGGTGGTTTGTACCTGTCATTCCAGCCTTAGAAAGTCCAAAGCAAGAAGATCGTCATGAAGCTGAGGTCTACCTGGGCCTCGTTGTTAGTCCCACACCAGGCTGGGTTTCAGTGTGAAACTCTCTCTCCCAAACCCTCCAAATAAAAATGATTCTGTTTATCTGAAAATGTCTTGAAATATATATAGACCAAGGGCAGTGTCTCAGCACTAACCATGACGAGACACGAGAGTCTAGGGAAACTCTAAATACTGGCTCCTCTCTCCACTCACTCTGCACTTCAATCTAATAGTCTCAACTTAGGAAGTTCTTCTGAGGAACGAGAAGAAACTAATGACTGAGATAACAGGGCCCAGTTGGTATGAGCTGTTGTCCCTTGCCATCACAGTGGCGCCATAGTTACAGGAGTAGAGATCACTGAAGTCACCATTGCGAATACAGTACGTAGCATCATAAGGTGAACCGATAAGTGAAGTCAGCCCCACTGAGGGGTAAAAGTTAGTGTGTCTGAGTACAGGTTCTTTGCATATGGCAGGAGTTTTACATTTTTAACCAAATTAGAGTATTGATTCTTAACATTGTTAGGAATTGATAGTCTCTAAGTATCACTTCAATATATCTAAACAATGCAAAAAATTTAAGTATAATCTAAGTTTCATAAATTCTATAAATTATAATGATCTTTCTCAGTTACTTTCTTTTTCTATAATGCAAATATGTAATAATAACAGTCACGACTGTATTATGGATTTTGCTAAAACATGATACTTAGATGCTTATTAAAATGCAATTTATTTTACTGATATAGTGGCATTAATATCAGCTTTAAAACTAACAATAGGATTGATCATGGGTACAGTATATCCAGATACTTTCTGCTCCTGTTAAATTCTTCTCCCTTAAG
Seq C2 exon
GATGTCTCGAATGGAGAGAGATATAACCATGAAAAGACACCTGATTGAGGACTTGAAATTTCGACAGAAAATAAATTCAGAAAGTAATGAGAGTTTTAATGAAATGTTAGGAACTCTTGAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043151:ENSRNOT00000008757:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.302
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]