GgaINT1002769 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8211474-8211808:-
Coord C1 exon
chr18:8211691-8211808
Coord A exon
chr18:8211592-8211690
Coord C2 exon
chr18:8211474-8211591
Length
99 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCACTTGGTCTCTTTGCAGGAG
3' ss Score
9.96
Exon sequences
Seq C1 exon
GATCCAGCGGAGGAGAGCCCTCCCCCCGCAGAACAATCACCCACCAGGGCAAGAGCCCCCCGAGGTGCAGGCAGAGCGGGAGCGGGCGCGGAGTGCGGTGAGCTCCCAGCAGCCCAAG
Seq A exon
GTGAGCTGGGCATGTAGTTTCTTCAAGCAATAATACTTAATGGTGAGAGCAGACGAGATGTTTCATGAGAGTTTCTATTCTCACTTGGTCTCTTTGCAG
Seq C2 exon
GAGTCAGTTATCGCTGTCAACGGTCTGCGCAAGGAGTATGAAGACAAGAGAGCCTGTTCCATCTTTAAGAAAAAGAAGAAAGTTGCTGTCAAAAATCTTTCATTTTGTGTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395:ENSGALT00000034529:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAGCGGAGGAGAGCC
R:
GGAACAGGCTCTCTTGTCTTCA
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]