GgaINT1006768 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1052161-1054884:-
Coord C1 exon
chr15:1054793-1054884
Coord A exon
chr15:1052275-1054792
Coord C2 exon
chr15:1052161-1052274
Length
2518 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
CTCCTCACCCTGTGCTGCAGAAT
3' ss Score
6.67
Exon sequences
Seq C1 exon
ATGGATACTCTACCATCGATCACCGGGACAAGGAGCGCAAATACAAGACCAGCGATAACACAGGGGATGCCTCAGAGAAAGAACCCTTAAAA
Seq A exon
GTGAGATTCCCTTTATTGCTGAGTGCTAGTTAGTGCCTTCAGAAGAAACAGAGCCTGGTGTTCTCAGCAAGAACAGGGTAGTTACTCACTAGAGGGCTGTAAAGGGTTTTTTTGGTGTCTTTGTTGCCTAATGTTAAGACAAAGCACCATTTCCTAACCTAGCACTGGCTAACTAGAAATAAAAACAAAATACTGCTTTCCAGTGCAGAAGTAAATGCAGGCAGTTGATATATTCTTGTAAATGAATGAGGTTGTAAGAAAATAAAGTTTTTGTTCTGTCATCTTTGTGCAGGCAGCATTCCCTTGCCCTGTAGTGAATAACCGTATTCAGTCTTTATTCTGAGAACAGTCACTTCAGAACATCACACTGCTTTGTTTTCACCGTGAGAAGTACGTGTCAGCTTGTGCATTTGTCTAGAGCAGCGTGGTGAGCAGCATTCATTTCAGCAGCACTCACTCTGACTCCTGACTGTAGACAGTGGGCATGGGCCAAGGAGATGGAGAGGAAGGAGAGATGTGCGTACTTCTGAGTGTGTGCCTTCTAAAAACAAATTTAGACCATTTTCTAATTTAACAGCAACAACAGCAGTCTTTCTTCATGAAGCGTTTTGCCTTGAGGGTTGTGTGCAAAAGTATCTTAGTGGATTCTGTTGAATTTCTGTTGCATTGCTATGCTTTTTCAGTAGATCTTTTTATTTAAAAGTTACTTAGTGCTTCTAACAATGCTGTGGCCATAACTTCTCTCTGGCCTCAAAACAAGCTTGTATTTTCCCCTGGGTAGGTCATTTCTGAGAGGGAAAAAAAAGATGCAGTGAACCAAGAATCGGTGATAGGAAATACTATTGTTAGTCTATAAAAAGCTGTCTTTAATAACCTTCAGCATGTTGCTGATAATATCAGAAAATCCAGGTGATTTGCGTTCACTGGAAACAATTAAACTTGAGTCAATTGAAAGAAAAACATGCCGTATTGAAGTGAAATTAAAATGTGATTTGCAGAAAAATCTTTCTATAGTTTGTGGACCAGGAAGATATCGTTCTGTATCAGTCTGCCTATGTTAACTTGCCTGTTCATGCAGTTCCTTCTGTGTCCTCCCTTTCTGTGAAGGTATATGCTGGAGAATGACTTAAATCCAGCTGCAGTTTTAAGCACAGTTCACTCCTTTTCAATTTGCCAGTTCTGGGTATGGTTGCATCCTGCTGGAGGCTGCCCAGTTAAACTTCTTAATATAATTGCTCCTTGTCTTGTGTCAACTCTGCAGTGCCAAACATGGCTTCCTGTTTTGAACCAGCGAGCCCTGAGTAAATGGTCTAGAGTAATGTGGCTGATCTGAAACAGTGATCTCTTAGATTCAGCGGGTAGCTCACTTCCCACCCCTTTTCTCTTTTGAACAGTTCTAGAAATAAGTGAATATCAGGGCAGTACATTGTTTAGGAAGCCTCTGCCACTCAGAAAGCAATTCGATAAAGAACAGCCGTTACAGTTTTCCTATTTAGTCATATTACAGCTTCTCTGCAATGTCCAGACGTGTGGTGACACCTATTAAAGTAATCCACTAGTGATCACCTAGCTGGCTAAACCTTCCCACTACATTTCTGCTTGATAGGGTCTGGTGAAGACAGAAGAGCATACTCTCACCTTGCCACTTGGAGGTGGTTGTGCTCTCTCTCTTTTTTTTTTTTTTGCAACTGATACAACCTGATTACTGAATTCAGTGTGTGCTCCCTCCTTCAGCGTTGCTCTGAAGTGACAAGAGATGGCCCAGCTCAGACCAGTATTAATGGTATAAACTTTCTGCCCCCTCATAACAGTTCTAGTGTGTTATGAGGATGCAGTGAGAACAGATGCATTAAGTGACATAAGTATTTTGATCAGTACAAGCTTGACAGAAAATGTCTTTCCAAAGAAAATAGGCTAAGGCAGAAGAGTTAACAAATACTTGTTATTTTTGCCACTCAGAGTTCATGGAGGTGATTTTCAAAATCATGTTACTCAGACCAAACTCCCAGTGTATGTCTGAGGTGAAGCACAACCCAGAGTTCTAGGGAGCAGCTGCTTTGCTTTTAGAGGACCACGATAAAAAATATTTCACCTCGGTAATGTACCTGCCGTAGTTATACTGCCTCCTGGTTTTAGGGATAAAGGGTTGCCTGAATTCAGCCTGTTATATGCCTCAAAAGCAGTCACAGCTGCATTCTCAGCTGGAGCAAAGTCTTGAGTAGCTGCTGCTCTTCGTTTTCCCTGTCTTGTGATAGAGAACTCTGGGGTCTTCTGGTTTGTAAACTGTTCAATAACCGTGGCTTTGAGGCTCAAGAGTGGCCAAGCATTTTGAATAATGATGGCAGGGAAGTGCAGCCTTTGGCTGCTGCAAGTGCTCTTGTTGGTACTGTGCCTTTGCTGCTCTTGTTTCTTTCTCCACCACTAATTTTCCCTCGTGCTCCTTTGAGCTGACTTGTTTGGTGGTTTTGTTTTATTAATCCGCTCTGTTTTGCTTTTAACTCCTCACCCTGTGCTGCAG
Seq C2 exon
AATGACACAAATAGGAAAAACATTAACAGGAGTAACAGGGCTTCGGTGAATCTGGTGGATGCTCGTGACATTAAACCCCAGCCTGTTGACTCCTGGGTCTAATTTGCATGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]