GgaINT1009210 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4936283-4936698:-
Coord C1 exon
chr17:4936564-4936698
Coord A exon
chr17:4936488-4936563
Coord C2 exon
chr17:4936283-4936487
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GTCACACCGCTGTGTCACAGGGC
3' ss Score
5.58
Exon sequences
Seq C1 exon
TTTGTGGACACGGACAGCATCCTGACCAACAACCAGACCCTCACCTTCCTCATGGCGCAGAACAAGTCGGTGGTGGCCCCAATGCTGGACTCGCAGACCTTTTACTCCAACTTCTGGTGCGGGATAACACCCCAG
Seq A exon
GTACAGCCCAGAACCCCTGGGGGGCTGCCCAGCACCGTGTCCTGGGCACGGTCACTGTCACACCGCTGTGTCACAG
Seq C2 exon
GGCTTCTACCGCCGCACGGCCGACTACTTCCCCACCAAGAATAGGCAGCGCCGGGGCTGCTTCGCCGTGCCCATGGTGTACGCCACGTTCCTGATCGACCTGCGGAAGGAGGAGACGGCACAGCTGGCCTTCTACCCACCCCACCCCAACTACACCTGGGCTTTTGACGACATCATTGTCTTTGCCTACTCCTGCCAGGAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(14.4=37.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGACACGGACAGCATC
R:
TCTTGGTGGGGAAGTAGTCGG
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]