MmuINT0034975 @ mm10
Intron Retention
Gene
ENSMUSG00000039787 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
Coordinates
chr2:29872563-29873012:+
Coord C1 exon
chr2:29872563-29872697
Coord A exon
chr2:29872698-29872807
Coord C2 exon
chr2:29872808-29873012
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAAAACATTCTCTCTTCCAGGGC
3' ss Score
9.6
Exon sequences
Seq C1 exon
TTCGCAGATACAGACAACATTCTTACTAACAACCAGACACTGAAGCTTCTCATAGATCGGCAGCTGCCGGTGGTGGCCCCGATGCTGGACTCTCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq A exon
GTGAGACTGGGTGAGGCCCCAAGAGCCCCAGGGGGAGGATAGATCCTGAGGCTTCAAGGCCTTTGAGCCAGGATAGGCTTGGCCTCAGCCCAAAACATTCTCTCTTCCAG
Seq C2 exon
GGCTACTATCGCCGCACGGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTCCCTATGGTCCACTCTACCTTCCTGCTGTCCTTGCAGACTGAGGAAACAGCCCGGCTTGCCTTCTACCCTCCTCATCCCAACTACAGTTGGCCTTTTGATGACATCATTGTCTTTGCCTATGCCTGCCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039787:ENSMUST00000047521:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGCTGGACTCTCAGACCT
R:
GGCAGGCATAGGCAAAGACAA
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types