HsaINT0033959 @ hg38
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr9:128424138-128424614:+
Coord C1 exon
chr9:128424138-128424272
Coord A exon
chr9:128424273-128424409
Coord C2 exon
chr9:128424410-128424614
Length
137 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AAAGCATCCCTTTTCCCCAGGGC
3' ss Score
7.45
Exon sequences
Seq C1 exon
TTTGCAGACACAGACAACATTCTGACCAACAATCAGACTCTGCGGCTTCTCATGGGGCAGGGGCTTCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTACTACTCCAACTTCTGGTGTGGGATCACCCCCCAG
Seq A exon
GTGAGGCCGGGATGGGGGCCTTGGGTGGACTGAGGTCCTGGAAGGAGGGACGTGGAGAGCAGAGAGCCTGAGGCCTTGGGGTCTGTGGGCAGGGGCAGGGGAGCCCTCTCACAGCCCAAAGCATCCCTTTTCCCCAG
Seq C2 exon
GGCTACTACCGCCGCACAGCCGAGTACTTCCCCACCAAGAACCGCCAGCGCCGGGGCTGCTTCCGTGTCCCCATGGTCCACTCCACCTTCCTTGCATCCCTGCGGGCTGAAGGGGCAGACCAGCTTGCTTTCTACCCGCCACATCCCAACTACACTTGGCCTTTCGACGACATCATCGTCTTCGCCTATGCCTGCCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123:ENST00000420512:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(14.0=37.8)
A:
PF137041=Glyco_tranf_2_4=PD(21.0=37.0)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAATCAGACTCTGCGGCT
R:
ATGTGGCGGGTAGAAAGCAAG
Band lengths:
253-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development