RnoINT0034832 @ rn6
Intron Retention
Gene
ENSRNOG00000026604 | Cercam
Description
cerebral endothelial cell adhesion molecule [Source:RGD Symbol;Acc:1304778]
Coordinates
chr3:8435459-8435914:+
Coord C1 exon
chr3:8435459-8435593
Coord A exon
chr3:8435594-8435709
Coord C2 exon
chr3:8435710-8435914
Length
116 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TAAAACATTCTTTCCTTTAGGGC
3' ss Score
9.96
Exon sequences
Seq C1 exon
TTCGCAGACACAGACAACATTCTTACCAATAACCAAACACTGAGGCTTCTCATAGATCGGCAATTGCCAGTGGTGGCCCCAATGCTGGACTCCCAGACCTATTATTCCAACTTTTGGTGTGGGATCACTCCACAG
Seq A exon
GTGAGACTGGGTGCGGCCTCAGGAGCCCCAAGGTCTTGGGAGGATAGGTCCTGAGGCATCAAGGCCTTTGGGCCAGGATAGGCTTGGGCCTCAGCCTAAAACATTCTTTCCTTTAG
Seq C2 exon
GGCTACTATCGCCGTACAGCTGAATACTTCCCTACTAAGAACCGCCAGCGCCAGGGCTGCTTCCGGGTTCCAATGGTCCACTCCACCTTCCTGGTATCCTTGCAGACGGAGGAAACAGCCCGACTTGCCTTCTACCCACCTCATCCCAACTATACTTGGCCTTTTGATGACATCATTGTCTTCGCCTATGCCTGCCAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026604:ENSRNOT00000060969:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=PD(21.0=37.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTTCTCATAGATCGGCA
R:
TGGGATGAGGTGGGTAGAAGG
Band lengths:
243-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]