GgaINT1010431 @ galGal4
Intron Retention
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2529178-2529838:-
Coord C1 exon
chr8:2529699-2529838
Coord A exon
chr8:2529358-2529698
Coord C2 exon
chr8:2529178-2529357
Length
341 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
TTCTCCGCTCGCCCTTGCAGGCT
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTACAGCTGCAACTGCACTGGCACCGGGTTTATGGGCCTGCACTGCGAGAGCCTTGTACCCCCATGCTGGTCACAGCCGTGCTACAACAATGCCACATGTGAGGACAGTGCTGATGGATACACCTGTCACTGCTGGCCGG
Seq A exon
GTAAGCCCCAGGTTCTCCTGTAACACCTCCTATCCCTCTGGGTTAGATAAATTCACTTTTTTTTTTTTTTGCTGAAACAATGCAAGCATGAAGCCATGTGGCCCTAGAAGAGGTCCACGAGCTCTGTGCCTGCTGGGCTCTATTTCTCACTGCAAGTCTGGGGGTAGTGCTCGCTCTGCCCAGAGTGGTGGTTCCTTGGAACAGGCTGCCCGGGGAGGTAGTGGATCACTGTCCCTGGAGTGGCACCGAGGGACGTGGTTAGCGACATGGCAGGGAGGGATGGGCTGGTGGTTGCACACGATGATCTTACAGCTCTTTTCCTTCTCCGCTCGCCCTTGCAG
Seq C2 exon
GCTACACCGGCTCCCACTGCGAGACCGACATCAGCGAGTGCAGCAGCGCTCCGTGCGCCTCGGGCCGCTGCCTGGAGCGCTCCTGGGCCGCCCGCTACGGCCACGAGCCCGCGCTGCAGCTGCCGTTCCGCCACGACCGCGCCGAGGGCTACGTGTGCGCCTGTCCGCCGGGCATCCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287:ENSGALT00000003596:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(40.5=31.2),PF0000822=EGF=PU(81.8=56.2)
A:
NA
C2:
PF0000822=EGF=PD(15.2=8.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCACCGGGTTTATGG
R:
GGACAGGCGCACACGTAG
Band lengths:
291-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]