GgaINT1011545 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10096353-10096897:+
Coord C1 exon
chr18:10096353-10096535
Coord A exon
chr18:10096536-10096753
Coord C2 exon
chr18:10096754-10096897
Length
218 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
CAACTTTTGTCTTTTTTAAGGGA
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGAAGTCAGTCCTGGACGAGATCATCGAGAAGCTGCCGGAGCCGTTCAACATGGCAGAGATCATGGCTAAAGCAGAGAATAAGACACCATACGTGGTGGTTGCCTTCCAGGAATGTGAAAGAATGAACATTCTGACCCATGAAATCAGGCGCTCTTTGAAAGAATTAGATCTGGGGCTAAAG
Seq A exon
GTATGCACTGGGGTGAAATCACCTTTCCCTACCCAACAGTTTCCTGTGATCTGCAAATAGCTGCTGCTTGTTTTAAAGCCCAGCTTGTACAAACCACTCTGCTGCCTTTGCTCACGCTTTTACACCAGCCCTGTGCTTTGTATGGAGTTTGAAAGCAAATGTAGCCATCAGCCTTGCTTCTTCCAGCTGCAACTGCCCCAACTTTTGTCTTTTTTAAG
Seq C2 exon
GGAGAACTAACGATTACATCGGACATGGAAGAGCTGGCCAATGCTCTCTTCTATGACAACGTGCCTGAATCCTGGACGCGTTACGCCTACCCCTCTCTTCTCAGCTTAGGAGCCTGGTATGCAGACCTGCTCCTTCGCATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:77
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCATCGAGAAGCTGCCG
R:
GGTCTGCATACCAGGCTCCTA
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]