HsaINT0049586 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76422538-76423189:-
Coord C1 exon
chr17:76423007-76423189
Coord A exon
chr17:76422682-76423006
Coord C2 exon
chr17:76422538-76422681
Length
325 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCCATCTGTGTGTCTCCTAGGGA
3' ss Score
10.36
Exon sequences
Seq C1 exon
GTGAAGGCCGTGCTGGACGACATCCTGGAGAAGATTCCGGAGACTTTCAACATGGCTGAGATCATGGCAAAGGCAGCGGAAAAGACCCCCTACGTGGTAGTCGCCTTTCAAGAATGTGAAAGAATGAACATCCTGACCAACGAAATGCGCCGTTCGCTCAAGGAGCTGAACCTGGGGCTGAAG
Seq A exon
GTAAACATGGGTCAGCCCGGCCCCAGGGACGTGGCTGGATGGTGAAACCAGCAGAAACCCAGGCCTCTGGCAACCCAGGCCTAGCACAGGCCCCGGATCAGCATGGTACTGCTCCCTCTCCAGAGCTCTGGCAGTTCCAGAACAAGCCCCGGGAGCTCATCTAGACCGTTCCTTAGCAGGAAGCGCTTGCGTGGCCCTGATGCAGGGCGTCTCCAGAGGCGCAGCACAAAGCCACACTGTGTTGACAACTCATGACACGCACTGGGGCTGGTGCTCTCCCAGGCCCCAGCTCAGGGCTCCCCACACCCATCTGTGTGTCTCCTAG
Seq C2 exon
GGAGAACTGACCATCACGACCGACGTGGAAGATCTGTCCACGGCTCTCTTCTATGACACCGTGCCTGATACGTGGGTGGCCCGGGCCTACCCCTCCATGATGGGCCTGGCGGCCTGGTACGCAGACCTGCTGCTCCGCATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:78
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.9=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATCCTGGAGAAGATTCCG
R:
CAGGTCTGCGTACCAGGC
Band lengths:
295-620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)