RnoINT0048851 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107031240-107031837:-
Coord C1 exon
chr10:107031644-107031837
Coord A exon
chr10:107031384-107031643
Coord C2 exon
chr10:107031240-107031383
Length
260 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
AATGTGACTATGTCCTTTAGGGT
3' ss Score
6.97
Exon sequences
Seq C1 exon
CTGGTTTCCAGGTGAAGGCTGTGCTGGATGACATCCTCGAGAAGATACCAGAGACGTTCAACATGGCTGAGATCATGGCCAAAGCTGCCGAGAAGACACCCTACGTGGTCGTTGCCTTTCAAGAGTGTGAGAGGATGAACATCCTCACCAATGAGATGCGGCGCTCGCTGAAGGAGCTGAACCTGGGACTAAAG
Seq A exon
GTAGAAACCGCAAGTGCCCTCCAAGGGCGCTTCAGGTCTCCAGTGTGGCTCATGGAGACTGGTTGGCGCGTGACTGTGAGCCCTTCCCTCCCCGATTTCCAGTCCTGTGACCCTCGATTACAGGTCAGAGAGGCTAGCTATTGCCTGGCCCTGGTCCCAGTCCCAGGAAGTGCCACCATGCTGGCACCTCAGGCACACAGCAGAGGGCTCTCCCCGACGCTTATCACATCTGTGCTCCAAAATGTGACTATGTCCTTTAG
Seq C2 exon
GGTGAGCTGACGATCACAACCGACATGGAAGACCTGTCCACCGCTCTGTTCTATGACACTGTGCCTGAGACCTGGGTGGCCCGGGCCTACCCCTCCATGATGGGTTTGGCAGCCTGGTATTCTGACCTGCTGCAACGTATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(6.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGACGTTCAACATGGC
R:
CCTGATACGTTGCAGCAGGTC
Band lengths:
292-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]