GgaINT1013095 @ galGal4
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9676974-9680257:-
Coord C1 exon
chr10:9680138-9680257
Coord A exon
chr10:9677206-9680137
Coord C2 exon
chr10:9676974-9677205
Length
2932 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
GTGTTCTTCTTCCTTTCCAGATG
3' ss Score
13.31
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGATGGAAACCATCGATGTCAGCATGGCTGCCAAAACATAATCGGAGGATACAGGTGTAGCTGCCCACAAGGATATCTCCAGCATTACCAGTGGAACCAATGCGTTG
Seq A exon
GCAAGTCCCTTTTTATAGTTTATGTATGGAAATGCATGCAGCTACAAGTGAAGGGCAATGGGTCAGTTTGCCATATATTTTTTTTCTGATCATTATTTACTACGTTCAGTGGAGTTACATTTCAAGTGAGCTGTCCTGTGAAAGGCAGTTGGTTTGAAACAGCCAGTAGCTCATATCCCGGCTCAATGAGGTAAGCACAAACAAGGTAAGCTTTGAGGGTGCTAGAAGTTGTATTGATTTTGAGGAAAAGCGTGTTACTCATGTGTATCTCGTGATGTGAACAAAGGAAGTCTTCTCAGCCATGCAGCAGTCTCCAATCTGAGAGTTTATTCTTGGTTAAACCTGACTCAAAACTAAAAATTCGGGTTGTTACGCTATAAAATTAAACTTCTGGAGTAAAGCACTTTAAATTCTATTAAAATACTACTCAATCTGTGCTTTTATCATTTGCTACAACTCCTACAGCAAGCTTGCTGTGGGTGAGCTCTTTACAGAATTAGTCATTTCTCGTAACCGACTACAGCTGCTGCCATCTGTCTAAAGACACTTCCTTGCAGCTTTGGGATAGACTTTAGTAACAGGTGCTCACAGTTTACCTTTGGTCATAAGCAACAAAAGCTAGTGCTCTTTATTTATGTTAAGGAGTAAATACACTGGAAAATTAAAACACATATTTCTTCCTTGTCTAAACTTTGGTTCTCTGAGCCCTCTTAGATGAGGCTGCATGTGCAGAGGCTGCATTGCTGCGGCGTATGACTTGAGCAGATAGAACTGGGTCCTCCGCAGGAGTCATGAGAAATGTCTCTGTGTCTCCCCATAGTGTAACATGTGGCATATTCAAACAGAAGAAGCACTTAAATAAGTTTTCCTCTAGTGACAGCTTTGTGCAGTTTCAGTTACATCTAATGGGCTTTACACAAGCTAGTCTTGTGTAGATAGCGGAGATGTGTTTGATTACTTCTTTGAGAACAAAGAGCTTCATATCTCTTTGTTTAGCTTTCTTTGCTTTCAGAAACATAAAAATGCCTTAGCTTGTTAGCACTGTGGTGCTCTGGGGAGATCTCTGCTTTTCGTCGTGCTTACCAAATTTCTTGACCTTTTATGCAGTCCTTGCTGTGACATTTGCTTGCTTGTGCTCCAGTGCTTAATGCTGATTGCATACAAGACAACAGAAAGTGAGCTCAAATACAGGATGGCCTTGAATGCTAATTAAACTAGAAGAGTATAGGGTTAAATTAGAATCTAATAATTGGCATGAGAGAAAAATCAAACAAGCCTGTAAGAACTACCAGTTCTGACTGCTGGAGGACTCTGTGGAATGTGAAAGAGTGCAGCTTTGCTGTTTTGCAATATCCTCACTGTTTCTGAGTTCTTGAGTGACACCTTTAAACTCAGTGCATTTCTAGCCTGGTTTCCAAACCAGGTGAACACTTATTTTATCTTTTGTGATGATGGACTACTGTCCAGGTTTCAGGCAGGACTGTCAGTTTCTTAATTCTCAGGCCCCACTGAAAGAAAGGCTTCAACTCTTCAGCAACAAATGCTTATTACCAGAGACTTCGCTAGAGAAAATGAGACTTGAGTGCCACAACTGGGGAAAAACTTGGCTAGCTCTTTCACCTTCTTGGACATGGGGCAGTCCAGGCAGAAACCCAAAACTGAGGGGCATGAGACCTGGTTTCATCCTGTGCTCATAGCAGCTCTCCTTCCTGCTGAGGCTGAGCATGGCAGAGCTGTGTGTATTGGAGTGCAGAGCACCAGAGAGCAAAGCTGGCACCTGATGGCACAGCTTGCATACAGTCCAAGGCTTCTGCCCCGTTTCCCCACCAACCACCCAAAATACGGGAGCTAACCTTGGTGATGTCTATGCTCTATCTGCTGTGGAACAAGGCAGAGTATGTATCCTTGTGATGCAGCAAGTATCTGTGGTTCAACCGTTCATTTATGGTGTTGACCTAATTGCTATGAATTCAGCTGTGTTAGGTATGTTGAATATTGAAACATCAATCTAAGTTAATGGCAAAGCTCATATGGGCTTAGTTAGAATTCAGACCCAAGTTTAACTCTTTAGGGTCCTCACACGATCACTTTTAATGTCTGTAACTATATACTTACGATACTTTTCTAGATCTCCTGGGCATACCACTGGGGAAGAATCCATGTAATAGGCTTTTCTGTAACAACTCCTTCATATTACTTGGCAATTCCAGTTCTGCAAACAGTTTGTGCCTTTTTTAGGTTATTTGATGAAGTGTTCAGGGACTTTTGATGTTGCTGTAACACATATTTAGATAATCACTGAAGAATGCTTTGGTTCCTCCCATGCCTTGTGCAGTGTGTGATTGTGTCCCCTGCCCAGACGATTCTGTGGAGCACCCTGCCATAAATCATGCTGCAAAAAGTAGAGCATTGCTTTTAAACAAAGAACAAACAGTCACATTGTTTGGGAAAGGACAATAATGCTCTGAATTAGTGCTTATTCTCCTCAAACATGGATGTGTAGGTTGGAGATGCTGCTCTGGGCTTTGTATGTTTATCCATGCAGGGATTTTCAGTGCCCGGAAAAGGTGTCAGAGCCTAATTTCCCCTCTTTTTCCTTTAATCTTGAATAGAATTATGAACATGGGATTACTAGACCGGATTCTCAACTATGTAAGGTTTTATCCTCAGGTTTTTTTCTGGAATAAGAAATGTTTCCTCCTCTGCTTCTCAGCTGTTCAGAGCACGAGCTGACATGGTATGTGACATCTTCAGTAGAGTAGCCCAGATGTTGCTCTGTTGTATGATGTAGTCACCTTCTAGCACCCAAGGTTGAGACCAAGCTCTGCTCTTCATTTCTGTGTTTCTGGTACAGCAGCACGTCTTTCTGAAGGGGTATGTTGGACTGACCTGAGGGTGAAAATTAACATGGTGTGTTCTTCTTCCTTTCCAG
Seq C2 exon
ATGAAAATGAATGTTTAAGTGCACACATTTGTGGAGGAGCATCTTGCCACAATACTTTGGGAAGCTATAAATGTATGTGCCCTACCGGATTTCAGTATGAACAGTTTAGTGGAGGTTGCCAAGATATCAATGAATGCGGTTCTGCACAAGCCCCATGCAGTTATGGTTGTTCAAATACTGAAGGTGGCTATGTCTGTGGATGTCCACCTGGTTACTTCAGAATAGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000007955:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]