RnoINT0059597 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117575273-117577060:-
Coord C1 exon
chr3:117576941-117577060
Coord A exon
chr3:117575505-117576940
Coord C2 exon
chr3:117575273-117575504
Length
1436 bp
Sequences
Splice sites
5' ss Seq
TAGGCAAGT
5' ss Score
1.91
3' ss Seq
TGGTCTTGTTTTCTCTGCAGACG
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAGGGTAACCACCGCTGCCAACATGGCTGCCAGAACATCATTGGAGGCTATAGGTGCAGCTGCCCCCAGGGCTACCTCCAGCACTACCAGTGGAACCAGTGTGTAG
Seq A exon
GCAAGTAGCTCCCGCCCTTCAGAGAAGCCTGGTTGCTAGCCCCTCACGGAGTCTGAACTCCTTTCTGAAGTGAAGTTACGGAGCCAACAACAGCCCCCTGAAAGTTTCTCCACCCCAATTGAAACCAAAGGGAAGTGATAATCTTTAAGGGTGACAGCATGTAATGGAGTGAGTGGCCTTTGGATGTAGTGGGGATGGGATGCCCTTAGACCTCCTTGATGCCATTGTATCTTCCTCTTCCACTGCACTGTTAGTCATCAGCCCGCACTGGGGATCTTTCTATGATATCTGGTTCCTTGAGGATTTACTTTGGTTCCAGGAAGATCATGGCCAGATCAGAATAAGTCAACACACACACACACACACACACACACACACACACACACACACAATACTAAGTATTTGAACTTATCAGCAAAACCCCCAGGCCTTCCACTTTTCCCACCTATTTACTCACTACAAATGCATGACACGAACATAGAAGGGAGATTGTCTGGGGAAAGAAAGAGGGTGGGGGCGGAGAGGGGGATAGTATAGGAAGTGGAATATGGTCAACGTACACGATACGCTTGGGTGACAATGTCTTTTTTAGACTCACCACCGTGAACAACGAGCATACACCAAGCTAAATAAGTACTGGAGAGCTGGGGAATCAGCTCGGTGCATAGAGCCAGTTGCTGCTCAGCACGTGAGCCTAGAAAAGCCTCCTAATGCTCACAGGATGGTAGGAAGGTTTACATAAATGAATGCAAATCACATTCTCCGCCCCATGTTAACTGCCTGAAAATGAATGCGTGGAGTCTCTTCCAGCTACACGGGCTTTAGTCGTGGCTCAGACACTGGAGCCACGGCCGGTTTGGCATTCAGAGAGAGAGCGGACATACCGGGAGACCGGGCACCTGCAGGCCCTTGCAGAGTTTTTGAAAAGAGAGTACAAATGGTCTGGATAAATGGGGTGGTCTCCCCTGGAGGACATCAGCTGTCCTCGACCTCTCATTCAGGGCCCAAGAGGAGCTTCTGAAGAAGTGATGGGTCTCTGAGGGCACTTGTGATCCAAGAACTCAGATAACTGTACAGTCTCTTCCCACCTCCTCTGAACTCCAAATTATAACTGTGGTCTTGCCTCACACAGAGCGAAATATACTAGCACTGGCTTTCAGTGGGAACTGTAGTCTGAGGCGCCTCTCAGCGCCATCCTGGGTATTTTGCTAGGAGCATTTAACCTCTTCTACCATATTTAGTCAACATGGCAAGAGGCTGCCTGCCACCACCACTACACCCCACCTCTCTCCTGTGATCTCCAAACTGACCACACTGCCTGCTTTCTTTTCTGAGAGTCTCCTTACCTATATAGGCCAGCAGGTCAGTCCCAAGGAACATGACCTTAGAATTCTATGTAACAAGACACATGTAATGTGGTCTTGTTTTCTCTGCAG
Seq C2 exon
ACGAAAACGAGTGCCTGAGTGCACATGTCTGTGGGGGAGCCTCCTGCCACAACACCCTGGGGAGTTACAAGTGCATGTGTCCTGCTGGCTTCCAGTACGAACAGTTCAGTGGAGGCTGCCAAGATATCAACGAGTGTGGCTCATCCCAGGCCCCCTGCAGTTATGGTTGCTCTAATACTGAGGGTGGCTACCTATGTGGCTGTCCTCCAGGATACCTCCGGATAGGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACGAGTGTGAGGGTAA
R:
CCGGAGGTATCCTGGAGGAC
Band lengths:
340-1776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]