BtaINT0061212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18009712-18011985:-
Coord C1 exon
chr7:18011866-18011985
Coord A exon
chr7:18009947-18011865
Coord C2 exon
chr7:18009712-18009946
Length
1919 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CTCCCCCTCCCCATCCACAGATG
3' ss Score
11.83
Exon sequences
Seq C1 exon
ACGTGGATGAATGCAATGGGCCTCATCGCTGCAAGCATGGCTGTCAGAACGAGCTGGGGGGCTATCGCTGCAGCTGCCCCCAGGGCTTCACCCCACATTCCCAGTGGAGCCAGTGTGTAG
Seq A exon
GTGAGTGGGGGGCCTGGGAGGAAGCTGACCCCCAACCAGAATCTGTCCAAACTTGGTGACTGGGAACCACTCCCAGGGCAGGATGCTGTGATAAGCAAGACTACCTAAAGGTCTGATGGGCTGGTTTAGAAGTTAGTTGAGTTCCCTGCTGCTGGAGAAGCTAGGGAGTCAGGGGTCTGCAGAGCCAGGGTGGCAGAGTGGTAGTCATTTCTCAGGGAGTGATAGTATGGAGAGCTCAGCGGAGAGTTTGAGATGTGCCTATGATCACTGAGAAAGTGTGCTTGGATTGATTAGTAATGTCTGCCATGGATGTGGCAATGGAAATGGGTGTGTGTATGCTACATCTTTTGTCGTACCTGTTGCAAGATGCCCTGAGTTTGAGGGACTAGTCTTCTGCCTTCCCTCCAGCCTTCCTCACTGCACACTGTTCTTTGCTGCTCCCAATAACAGCGTCATCCTCAGCTCTCCTCTTCCTTCTCCCCTGCAGTCTAGCCTTTACATTCTACCCACGTGGGGACCACTCTCCTGCGACCTCTCCATCACCTTTCCTTGGCCTTTGCCTTCCACCTCCTCTGCTCTGGGTATCACTGTCTGCCCCTCCCAGACTCTCCACCCACTGTGACTCAGCTTTCTCTGTCCTGCCACTACCTCCAGCACTGCCTTCTCTCTGGCTCCTCCTCCTGCCCCTCCTGGTGGGTCCTAAGCTAAATTCTCCATCTTTTGCCCTGTCTCACGTGTTTGTTGTCCCCTGGGAGCCCACAGGTAATTGCCTCGTTGGCCAGTCCCCGTTTCTCAGCCTGTCTCCTGCTCTGCATACTTACTCATTCATTCCTTTGGCAATGGTATGCCCGGGACCTGCCTTATTCAGGCCCTATGGATGCAGAAGTGAGCTGAGATCAGACTCCATTGCTGCCCACTCATTGTCCAGTCTTGAGGGGGAGACAGGGATCAATTATGTCAGTGGTTCTCAACCAGGTGCCATTTTGAAGTGTCATGGAGATACTTTTGATGATCACAACTGGGTGCTGGGTGCTCCTGGCATTTAGTGGGTGGACAGCCACCCAACACAGAGAATGAAATGGCCTCAAACCACAGTAATGCCAAGGGGGGATATCTTGTTCTAAGAACATCCCACCATTTAGGAATTCCTGGGAAGTTTTTTGGTTTTGGTTTTTTTTTTTTTTTTTTTTTCTCTCTTTTTCTGGCCACACTGCCCAGCATTTGGGATCTTAGTTCCCCAACCAGAGATCAAACCCATGCCCCTGTAGTGGAAGCAAAGAGTCTTAGCCACCAGTCTACCAGGAAGTCCCTAGGATTCCTGGGAAGTTTTGAGAAATGCTTCAAAGGAGAATCACGGGATCTGGGGTGGGGAGGTGAAGTACAGGGGCCGATAGACCTAGTCCAAGGACTCACAGGAAGCTTGATGGAGGCTTTTTTTTTTTTTTAATAGCTTTATTTATTTATTTATTTATGGCTATGATGGGTCTTCATTGCTGTGCAGGCTTTTCTCTAGTTTCAGTGAGTGGGTTCTCATTGCAGTGGCTTCTCTTGCTGCAGAGCATGGGCTCTAAGGCCTGCAGGCTTCAGTAGTTGCAACACATGGGCTCAGTAGTTGCAGTTCTGGGGCTCTAGAGCACATAGGCTCAGTAGTTGTGGCACACGGGTTTAGTTGCTCAGCCATATATGGGATCTTCCTGGATCCGAGATCGAACGTGTATCCCCTACATTGGCAGGCAAATTCTTTACCACTGACCCACCAGGGAAGCCCCCTATGGAGGTTTCGACATTGGTCTTGGGCTTGAAGAAGGAGCTGGAGTTGCTTCGTGGGGACGGGAGCAATGCAGGTGGAGGGCTCAGGAGATACGAAGGTGGCCCCCCGCCCCCCACCTCCCACCCTCTCTCCCCCTCCCCATCCACAG
Seq C2 exon
ATGAGAACGAGTGTGTCCTGTCACCCTCGGCCTGTGGCAGTGCCTCCTGCCACAACACGCTGGGCGGCTTCCGCTGTGTCTGCCCCTCGGGCTTTGACTTTGACCAGGCCGTTAGGGGCTGCCAGGACGTGGATGAGTGTGCGGCTCGGAGCGGCCCCTGCAGCTACAGCTGTGCCAATACCCCCGGTGGCTTCCTGTGCGGCTGCCCTCGAGGCTACTTCCGGGCTGGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.9),PF0764510=EGF_CA=PU(92.3=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAATGCAATGGGCCTC
R:
CCCGGAAGTAGCCTCGAGG
Band lengths:
342-2261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]