GgaINT0145594 @ galGal4
Intron Retention
Gene
ENSGALG00000000327 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr28:390694-391252:+
Coord C1 exon
chr28:390694-390813
Coord A exon
chr28:390814-391020
Coord C2 exon
chr28:391021-391252
Length
207 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTTTGCTGTCTCTGGTGCAGATG
3' ss Score
10.16
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGACGGAAACCACCGGTGCCAGCATGGCTGCCAGAACGTGCTTGGAGGCTACAGATGTGGCTGTCCACAGGGCTATGTGCAGCACTACCAGTGGAATCAGTGTGTGG
Seq A exon
GTGAGTGTGGGACAAGGACCCTTGCATCCTGGGGCTGAGGGCTGAGGGACAGATGGCAGTTGGGCTCTGAGTCCCTCTGCAGCCACTCTGACCATTGCTGACACAGATTTCTGGGTTCACATCTGCAGAGCCAGCACTGTGCTTCCTGCCCTGCCCCAGAAACCTTTGCCCACTAAGTTTCTAACCAGTTTGCTGTCTCTGGTGCAG
Seq C2 exon
ATGAAAATGAGTGCTCCAGCCCAACTGCCTGTGGCTCTGCCTCCTGCTACAACACTCTGGGAAGTTTCAAGTGCGTCTGTCCGTCTGGCTTTGACTTTGACCAGGCCTTTGGGGGGTGCCAGGATGTGGATGAATGCTCAGCTGGCGGCAGCCCCTGCAGTTATGGCTGCTCCAACACGGATGGAGGTTACCTCTGTGGCTGTCCTGGAGGCTACTTCCGAGCAGGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327:ENSGALT00000000433:62
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCTTGGAGGCTACAGATG
R:
CTTGTCCTGCTCGGAAGTAGC
Band lengths:
302-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]