GgaINT1014833 @ galGal4
Intron Retention
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10469531-10475156:+
Coord C1 exon
chr6:10469531-10469671
Coord A exon
chr6:10469672-10474993
Coord C2 exon
chr6:10474994-10475156
Length
5322 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GTGTTCATCTCTCTCCCCAGATC
3' ss Score
12.79
Exon sequences
Seq C1 exon
GGAGGAAGGGGAGGCGCCGCGGCCATCCCGGGGCGCCGCATCGCTGCGTGCGCGGAGCCGCCCGCTACAGCCGGCAGGATGATCGCCGCCCAGCTCCTGGCCTACTACTTCACCGAGCTCAAGGAGGATCAGGTCAAAAAG
Seq A exon
GTAGGGTTCAGCCACGAGGAGGACGGGCTGCACCCCCGCCGCAGCCCAAGTGGCTGCTTTTTTTTTTTTTTTTTTTTTTTTCTCCCCCTAAATCATTTATTTTGCTGCCGTCGTTGCTTTGTCCCCATGGCCACCCCGCTATGGGCGGCACAGCCGTGAGCCTCACCCAGCCCGAGCAAGGCGAGGTGGGCACGGTCGGGGTGCCGTGGTGCTGATGGGGATGGCTGCAACCCCAAGTGCCGTTCCAAGGGCCACTCCGGCATCCTTCAACAGGGGTCTGCTCCTCTCCGGGCATCTGCGGGCATCCATCGCTCAGCAATCGCTTGCAGATCGTTTTTGAGTTACATCTCGCCGTGGCTTCTGAGCGTATAGGTGGCGATGCTTGGAAGGGAGAAGTTGCTCTGTGGATATTTTTGTTTCTCCTCCCGCATCAAGCAGCACGGTTGGCGTAGCTGTGTGGTGCGATGCACAGCGTGGGGTAGATACAAACATGGCAGGGAGGTCCTGGTCGAGCACGCTGCAGGGCTGGGGGAGCAGGGAGTCCAGGGCTGGGGATGCGGGGATGCAAATCAGGAAAATAATTGCAAATGTCACCAGGCCCCGCTGTGCTGCCGGGCTGACGTCACGGAGCAGAGGCTTCCCTTCCCTTCTCTTCTGCCACCTCCTCCGGCGCAGCTACGTGACCCACTCGGCGTGGCCCAGTGCCCGCCAAAGGCATCCATCCCTACAGTGCTTTAGGGAAGCCTCGGCCGTGGTGTTGGCAGGGCTGCTCCGTGGGGCTCACCCTGCAGGAGGGGGCACCTCCTTGCTTTGGGCCCCTGCCTGTGCCTGGGGGGACTGCCCTGCCTGCCTGCAGCCCCTTCCTCTTTTGCATCAACCCCAGGCAGCACCCCTTGTGCTCCCCATCTCCTTCCGCTGTTTTGCTTTTAGGCTCTTCCGTTCTGCAGCCCTTGTGAGGAACTGGAAGGCCTTCAGCCCCCGCAGTAGGAGCTCCTTGTTCCCAAAGGCCCTTCGTTCCCTTTCCCATAGGATTTGTGCACGTTGCAGCCGGTGCTGGGCCTGCGTGCCTGAGTGAGGCCTCCTCTGCCTGGCTGTGCTGTTATATTTAGCAACTCCAGATAAGCATAGGGTTGCATGCTGCGGTGCTGCGTGGGGAAGGCTGAGAGGGAGCATGTAGGCCTCCACGGTGCTCCCGGGGGTTATTTATTGCAGGCTGGTTTGGCACCACGAGCTGCTGTTGGCTGATGGCATGGCAAATCATTTGGCTGGGGAGCTGGGAGGCATTCTTTGGTTTGGAAACTAAAATGAAATCCAGTGAGAGAAAAGCAGGCTGCCCGTTCTGGAGGACTTCAGACATCTGCTCCTGCCCACATGACTTGGGGCAGGTTTTGAGCCCCCTCACTTGGACGTCCATAGGGAGTGTCTCTGTGCTGCTCAGCCCCTGTGTGACCCCCATGCTGGTTCCAGGCATGCCCTCAGCCTGGAGGAACAGTGTCTGCTGCTTCTATGTTGTTGGACGTTAGGCATTCTCTTACATTTGAGAGGAATTTTGGCCCCACCTTGCAGGTTTTAGAGCACTGTACAGGGCGAGTCACGGCAGGCAGGAGGAGCAAGGCAGTGTGTGCGGTGCTGAAGGACACACAAAGCCCTGAATCCTTGCACTCGCCCATGAGCCTGCTGTGCAGAAGCAAGCAGGTGACATGCAGTGCCATGTACAACCCAAATAGGGTGGTTTGACTGAGTTGCGTCCTGCCCTTAGAGTGCTCTGGTCCCAGCAGGTTTGTGCCTGCTGAGCTGGCTCTGGAGTGGGGAGCACCAGGTGTTGCCTGATTGCCCTGTCAGGGGAACAACGCCTTTTCGTTGTGTTGCTTCACACGAGAAGGAAAAAAGTCGTTTGAGAGTGACACTGAGATTATTAACCTTGAAAAGAACGTGATGGAACAGGGCATAAAATGTAGGCATCAGGAAAACCCCTGGAGCTCTGTCCCGTTGTGTAGAGGCTTTTCAGAAACCGATCTGATAAACTGTAAGGTTGGGGTGGCTGAGCTGCCTGCTGTAACATGCTGTGGCTCCTGGTGAATCTTCCCGATGCAGAGCAGCACAGATCTGCAGGAAGGTGTCGGTGTGGAGAAGGGCTTTACACGAAGGCTGCACTGGTACAAAAGGTGTTAATGATTTCTGAAGTTTCGGGAGTGCCCTGCTCTTGGATGCTGCTGGCAGTGTCTGAGTAATTGGCTGCGTGTTTCATGGAATCATAGAGCCACAGAATGGTTTGGGTTGGAAGGAACCTCAAAGCCCCCCCAGCCCCAACCCCTGCTGTGGGCTGGCTGCCCCCCAGCAGCTCAGGCTGCCCAGGGCCCCATCCATGGCACTGAGCACCTCCAGGGATGCGGCACCCACAGCTCTGGGCAGCAGTGCCAGCGCCTCACCACCCTCTGAGTGAAGAATTTCTCCTTAACGTCTAACCTTAATCTCAGGTCTTTTAGTTTACAGCCATTCCCCCTTGTCCTATCACTATCAGTCCATGTAAAAAGTTGCTCCACTTCCTGCTTATAAGCTCCTTCCAGGTACTGAGAGGCTGCTATCAGGTGTCTGTGGAGCCTTCCTTCTCTTTTGCACAGTGTGTGAGGATGGGCCCTCAGTGCTGTCTGTTGCGTTACCCACTCATGATGATCCACACTTTCCCTTGGGGCTCCTGCAATATCCTGAATTTCAAACAGCCCTTTTCCCCCAGCACAAAGAGTCTTTCTTATGTGACGAAGAAAAATTACCTGTTTGTGGTTTGGATGATGAAATCCCATTTAAAAAAAAACAAAACAAAACAAAAAAATTTGCAAGTTCTGTCTGGCTATTAAAAAACATAAAATAAAATAAATGGAAATAAGAAAAGCGATGGAGCTCCTGAAGACTTGCACAGCAGCACTCAGGGAGGATGCCCATGCTGAAGGCAGCTACATAAAGCAGTGTTTTCTGCTCCTTGCTGCTCGCACTGTGTGCAGGGCTGTGCCTGGCTGGCTGCTACCAGGAGTCTCGCTGTCCCTGCCGCCCCGCTGCCACGTCCCTTTGGATAAGGCTGGGATTTGCTTTCTGATCAGCTTTGGCCACGGGCAGAGTGGGGTGTTATTAAACCTCCATCCTGTAATCCAGCCCCCGTCTCCCCGCCCAGTTATTCGCTGCTGTTTGCTGGGGCTTTTCCCTCAGAGCAGTGCTGCTTTTCCCTTTGGCTGTCCTGCTGAGATGACTAACCCTTTTCCTGCCTGGGAGAGAATAGCTATTCCCCCCCCCCCTCCCCAAACTAATACACAGGAGCTGTTTTGTTTTGAAGCGTGGTTTTGACCTTGCCTCCCCTCCTCCCTGCCCCATGAGTCTCAGCAGTGAAGATGGCCTCAGCGCGATGCTCCCGGCCTCGTAAGGCTGACAGCTCTTGCTGGCTTTTCAAGGGGAAACCAGAGCCCTGCCTCCCATTTTCCCCCGCTGCAGGAGGGCAGCTCTAGGAGCATGGGCTTGCCCGGTCCTGACTGTGCAAACACTAAAAGCTGCACTCACGGCTGGATGAGGTGGAGCTCAGGGCCTCAGCCCTGTTTTCAGAAGGAGGGTGCAGTGTTGTAAGGGGGTATTTTCATGGCATGATGCATCAGCGTAGCTGTCACTGGGGGATTTGGGTGATGGGGCCTCTGAGCGGCGGTGTGGGCTGCTGACAGCCATGATAGCTCCAGTCCCCTCCCACCTTTAAAAGGGAATAACCTCGGGCTCTGACATCACTGCCGAGCAGGCTCTGCTAAAAAAAGCTCTGGCGGCATTTGCAGTGGCAGAGAGACCTTCCTGCAGCCTGGCACCAGCCTCAGCACCGTCTGTCCGCACGCTGCTTGGTGATGCAGAGGGTCTGCACTGCCCGGGTTTGCAGCCCCACGTTTCAGCCCCCAGCCCTGCTATTCCGGATCTGGCTGGTGCCATCTGTGCCCCCTTCCTTGGCTGCCCGAGTGCTGCTCACTGGAGCACATCTGGTTTGGGGTGATACACTATCTGGTACTGCAGAAGCGCTTTTTGCAGAGCAATCCAAGTGGCGCCGGGTTTATGACCAGCTTAGGGTCTAATTACATTTTGACTGTCTGTGATTCCTTCATGTTTGGCGTTATCCATCATTTCCTGTATCAAAGTCCTAGGTATATGCAGTATCTACATACGTATACTTTTCAAGGGGCGTTTTCTTGTTGCTCCTGCTGAGATGTAACATCAGCGGGGAGATGAGTGCTCTCGAGGCTTCCACAGCAGCAGAGGAGATGCAGAGCCCCGGCGCAGAGGTGTGGCTTTGGATCAGGTGGTTCTTCCAGTTTTGCTGAGGACAGAAAACATGAGCAGGGCTTTATTTCCTCGATCCTGCTAAGCTACGAGCAAAAGCAATCCCAAAGGTGTGGCTTCAGTTTGAACCTTTTGTGTGCCATTTGCAGAATCAAGTTTCTAAGGCAGATAAAGGAAGGCATGAATGGACTGGCAGCCTAAATGGACAGAGTGGGACATACATTTGGCAAGGAGCCCCCAGGCCGAGTTGTACTTCTGAGGTGCAAAGCATTTCTCACTCTTTCTGGTGCTGAAGATGGGTGTAACGTTATGGAAAGCAATGTTACTGGGAATCTGGAAACATCTCCCTTTTCCAGGGTGATGAAGCCAGAAGGGAGAAGTCAGCCACTTTTAATTTGACATCTCATGTTGAGGAGGAAGACTCAACCTGCCCACAGCAAAGTTCTGCCTCTCCCCAGCCTCTGGCTGAGATGGTTCTGCAGCAGCATAGGGAAGGTACTTGGGAATCATTTCTTAGCTATTAACATAGGGCTGAAATTGCTGCAGCGGGTCCTTTGCAATGGAAGATTTCAACACACAAGGCACCTTGGTGGGTTGCAGCAATGCCTGCATCCCCCCACGTAGGACAAGGTGCCACAAGAGAAATGTTCAGCTTTGGTTTTTCAGCTCATGGATAGTCAGGAGAGATGAGAGGAGGGGGAAGGCTGGCAGTAAAGGTGTGAGGCTGCGGGTAAGCTTTTTTTTGTGGAAAGGAGAATGCAGAGTGATGTGGGGCTGGACTTTGCCTTGGGAAGGCAGTGGGATGGGTTGGCTTCAGCTCATGTAAGTCATAACACTCATACTTCTTCCTTGGTTTTGTGTCAAAAGACAAGGCATGAAGCGCTTGACTGTGTTGCTGGCTTGGGCAGGGCACCAGTGCTAGGGACTATCCGTGTATTATCCTTGTAATTCGGGAGTAGTACGTGGTATAGCTCTCCTTGGACACCTTGGGACATCCATGCTTGTGTTCATCTCTCTCCCCAG
Seq C2 exon
ATCGATAAATACCTTTACGCCATGCGGCTCTCTGATGAAACTCTGATAGACATCATGGCTCGCTTCCGGAGAGAAATGAAGAATGGCCTCTCCAGAGATTTTAACCCAACAGCGACAGTGAAAATGCTCCCTACCTTTGTGAGGTCCATTCCTGATGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222:ENSGALT00000006719:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0481510=Sec23_helical=PU(25.0=81.0),PF0034916=Hexokinase_1=PU(2.4=23.8)
A:
NA
C2:
PF0481510=Sec23_helical=PD(72.1=89.1),PF0034916=Hexokinase_1=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]