Special

GgaINT1014841 @ galGal4

Intron Retention

Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10493555-10496298:+
Coord C1 exon
chr6:10493555-10493788
Coord A exon
chr6:10493789-10494467
Coord C2 exon
chr6:10494468-10496298
Length
679 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GCCATTGTTTCCCTTTGCAGCTT
3' ss Score
11.13
Exon sequences
Seq C1 exon
CGACAGGTTAGCCTTGCTTCAGGTGCGAACCATTCTCCAGCAGCTGGGGCTCAACAGCACGTGCGATGACAGTATCATTGTCAAGACAGTGTGCGGAGCGGTGTCAAAGCGAGCAGCTCAGTTATGTGGTGCCGGAATGGCTGCCGTTGTAGATAAAATTAGGGAGAACAGAGGCTTAGAGCACCTGGAGATAACGGTTGGTGTGGATGGGACTCTGTACAAACTACACCCACA
Seq A exon
GTGAGTATTCACCTCTGTGTTTGTTTGCCTGTGACTTGTAGCGCGTTGCTGCGTGTCCTTTTCCCAAGCGATTTCACTTGTTTGCTAGGATTAGAGCCAGGGAAAAGAGATCTTAATCAGGGCTGGCTGGAGCCTTCTAGAGGGTAATGAGGATCAAGAAGGACTTGTGAAGGACTCAGGGGGCTGTGCCAAGCTGAAGGTGACACAGCTTGCTGAACAGGTTTGAGGCCACATAGCAAGGGAATGATCTCTTGGCTATGTACAGGCAATGACAGAGCAACTTGAGTGCCTGATGCCTCTTTGGGAGATGGTCCTGCTCAGCAGGCAGAGGGGATGGACCATTAGGAAGCAGTGACAGGCAAAGGAAGAGGTCTAGTACAGCTAGGCCCACAGGGAGGACAGGAGTAGTGCCTGTCTCCTGTGTAAGGAGGTAGATGGGAAGGAGAAGAGCATACAATATCTCTTTTTCCACTTTGCTGTGGTTCTAGCTGTCCAGGTAGCCCCATGTGAAGAGAGAGAGAGAAAAGACCTCTGCTCCCAGTCTTCCCACCCACTATAGTTTCCAGCATTTAGTTCCCTCCGCTGTGATAAGGGGAGCACTGCAAAGGCCCGCAGCAGTGCTGTGCTCTGCAGGTGCTGCAGGACCTCCCTTGCCCACTGCCATTGTTTCCCTTTGCAG
Seq C2 exon
CTTTTCGAGGATTATGCACCAAACAGTCAAAGACCTGGCACCCAAGTGTGATGTGACCTTCCTGCTCTCGGAGGACGGCAGCGGGAAAGGGGCAGCGCTCATCACGGCGGTGGGATGCAGGCTTCGCGATGCTGAGCAGAACTGAGCTCCACAGCCCTGGCCCCGAGTCTGTCTTGTGAGCACCTTCTCCTAAAGCAGCGACTGCATAGCCTGAACTGGTTAAAAAAAGAAAGAAAAGAAAGAAAACAACGGAACTCACTGCTTTATCGGGGAAAAAAATACAACTAATGACATAAAAAGAATAGGATACAAGATAGAATGTGTGCTGTTAATAATATCTCCTGTTTATGGACCCCAATCTGCATGTTTCTTATTCACCTTGTTGGTACCTTCCCCATCTGTAGGTCATGGAAAAAACCGGTCTATAATTTCTGCAGTCACAGAACAATCGGTTGTTGTCCGAGATGAAATTTCCCCCCGTTGATGTGCGTTGAGACCTGCCATTGCGTCGTACCGAGTGTGACCTCTGCAGCATCCCTGTCAAGTGCACCGCCAGCACGCTGACCACCACGCCTGGGCGCTGGTGCTTTCGGTGGAAGGGAAGCAACAGTTCCCTCCCGCAGATCTACCTGCTGCTGTTATGTTTAAGGCCACTGTGGAAGAATTGCGGTGTGTCGGCGCTGTGCACGCACGTAACTATAGTGGGATTTGACAACGCGACTTACTTGCTTTCTTGATGCCTGTTTTGTCATGGTAAAATTAAAGTAAACGCCCTTGTCCCACTGATCTGGTTCCACTGGTATTTCCCCTCGCTTTTGTGAACGGTGTTGTGTTACTGAGCAAAATCTGTAACATTTCGGCACGAAATCCCTACGGAGTCCAAAAAAGCAGCCGGTGATTGGGGTAATCCAAATCTTCAGACCTGGGAAATCGGTAGACCTGTGGTCCCTGGGCTGTGCTGTATTCACCTGTTCAAAGAGTTCTAGGAAGGTTATTTTTTATCTCTTCTCGTTAGTTTAGCTCAGGGTGTGCGGCCGCCCTCCTAGGAATCTGCAGCTCAGTAGTATTGCTCGGACACGTACTTCTGTCTCTCGCCTTAAATGGGTATTTGCTTCCACACAAAGCTTTAATCTTTAGTACTGTTAAGCAGGCACTCAGAACATGAGCACTCAGCTAGAGTTAATGACCAGAAAGGAACATGAGGGCTTCATTTTGAGCTTGATGTCGAGGACCTGGCTGCATAACCTAAACAAGCCACAAAGACAACATCGGGCCCAGCTTATTCCAAGGACTAAAGCAACGACAAAGACCATGTACACTTGGTGCATCCTGCCCTCTGTCGAGTTGATGCCATTATTGTATTTGCACAGCAGTCAGTTGCATTACTTACACTGAGAAGCAGTTAAGAAGGCAAAAGCTACATAACACTCTGCTTTCTGCAAAGAGGGAGACCATGCAGCAGCGCTGAATTCCCACTCTTCTACCAAAATACATGTGAGGCCTCTGCATGGTTCTCCCCGCTCTTTCCTCCTGCAGAAAGTAGCTGGCAGCGTGCAGGCTGCTCCTCTTCGTCCTCTTTCCACCCCTAAGATTTGGATTGCCCTACCTATTGATAACATTTCAATATGCGTTATGGTGCACTGTGAGTGAATGTTGTAAAGTAACACGTGAGTCACAGACAGTCATTGCAGCTTTAAGTGTTTGTCTACCTGAAAAATTGCATGCCTGACTGGTTTTGCAAAGGTAGAGAGTCTTTTTACTTTGCACACTAGTAGCTCCAGTACTAGTGTTACGTGGTATTTGTGACAATATTAAACTTTTTGATGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222:ENSGALT00000006719:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGCTCAGTTATGTGGT
R:
CCAGTTCAGGCTATGCAGTCG
Band lengths:
344-1023
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]